Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:1658495-1660915[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0027 4.7 7.0 0.0 19 50 156 187 147 190 0.82

2 8 1.1 1.9e+03 -1.3 0.2 27 48 193 214 192 217 0.80

3 8 2.9 5e+03 -2.6 0.1 27 44 223 241 221 243 0.83

4 8 0.013 23 4.8 0.0 22 44 321 343 316 352 0.86

5 8 0.0017 2.9 7.7 0.0 26 48 387 409 373 413 0.86

6 8 0.00037 0.65 9.8 0.3 2 31 428 460 427 478 0.81

7 8 0.029 50 3.8 0.3 26 49 522 545 519 550 0.89

8 8 0.33 5.6e+02 0.4 0.1 27 49 552 574 547 575 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0027	4.7	7.0	0.0	19	50	156	187	147	190	0.82
2	8	1.1	1.9e+03	-1.3	0.2	27	48	193	214	192	217	0.80
3	8	2.9	5e+03	-2.6	0.1	27	44	223	241	221	243	0.83
4	8	0.013	23	4.8	0.0	22	44	321	343	316	352	0.86
5	8	0.0017	2.9	7.7	0.0	26	48	387	409	373	413	0.86
6	8	0.00037	0.65	9.8	0.3	2	31	428	460	427	478	0.81
7	8	0.029	50	3.8	0.3	26	49	522	545	519	550	0.89
8	8	0.33	5.6e+02	0.4	0.1	27	49	552	574	547	575	0.85

Sequence Information

Coding Sequence: ATGGATGAAATTATAACAGTTCatcaatgtttgttttgtccGCAAACTTTTGGAAGTGCCAGTGCAAAAGATAATCACATTTTGCAGCATTTTGCGCAAGAAACCTGCAGAGATTGTGACCAAAATTTGATTCGAATCGGCAGTAATTTGTACACTCTACACAATGCCGTAACATGTATTAAAGTTGATTTCAAATCAGAAGAACCAGTTGAAGAATGTCAACAGGTAACCAAacaattcgatgaaattgaCTCTATACCCAATGATACGACATTGAATCCATTGTTTGTAGAAGATATTGAAACAAAGCCCGATATAAATGCCTTGCATGAACAATTTATGTTGATGGATGCAAACAATTTGGCAGAAAGTTGCGATACTGATCTGaaacaacatgaaaatattgaaccaATGCCACATTCAAATCAAGTGGACGACTCACTTGGTGCATCTGAATCGAAAAGCAACCAAAGTAGTGAGTCCAATGACTGCGATATCTGCGGAAAAGTCTTCAAGAACAAATCATttctaaaaaaacacaaatccaTAACACACAGTGCACCCGgccattttcattgtgaacCATGTCAAATAGTTTTTACACGAAAAGACTCGCTCCGTAAACATAATCGCGTTAAACATGATCCGAGCTATGTGACATACAAATGTGCCTATTGTCGTCATGCTGTATTCACCCAAATATCATCACTGGAAAAACATCTTCCCAAATGCAAAAAACGAACGGAGAAATTAGAGAGTGAAGGTGGTGCTGGTACTTCAAAGGACAATGAGAATATTGGAAATGAACTTATCGAtgttaatttaataaaaaacgaGGATGATATTTCTACAAAAGATCTGCAAAATAATCAACCATCATCATTCACCGCCATTCAAAATAGTAATGATGCTCTTCCGATCAACATCAATGAAGCGATATATGTTAAGAAAAAACCAACTGAAAACGACAACAAATGTGATGTATGCTTTAAGATGTTCTTCGACAAAAATAATGTCCGGCGACATAAAATGTCTGTTCATGGCGTATCATCTGGATCGTACCCGTGCACTAGTTGTAAAGAAGTGTTCATAACCGCCAGCGATTTGATCGATCACAAaacgaaatgtaaaaaagaaacgaacgaCAATGCTGGTCATGAATGTACTATAtgcaaaatgttattttcacaaaaacaaGGCCTTTCACGTCATATGCAGCTAGAGCATGATCCAAACGTTGAAAAGTTTCGGTGTAAATTATGCAGCCGTGTTTATACCGATAAATCGAAATTCGATAATCATCCATGTGGAAAAAGTAGAAAGTCAGCCCCCAGGAATCGTCAAAATAGCTCACAAAATATTGTATGTGATATTTGTGGAAGAACATTGAGCGGAAAAATACCATTCCGAAATCACCAAATCAGATTTCACAGTCCAGCCGGAACGAATGTCTGTGTCTGTAGAAAGATTTTTAGCACAGCTGAAGCGCTTGACGAACATCGGGCCATATGtgaatttaagaaaattaGCCGATTTCCACATATACATTTGGGCAAAACATTCCAATGTCATTTATGCCAGAAAGTTGTTAAAGAAATAGACACGTTGAAACGACATATGCGACGAACACACCTGCCAAATGAAAACTTAAAATGTAAAACGTGTGGAATGATCTGTCAGACCAATACTGAACTTCGAAATCATTATGAGACAATGCACTTGAAAATTCTGGACCATCTATGTAGTTTGTGTGGAAGGggatttaaatcaaaacaatcgcTAAGGTATCACATGTATTGGCACACAGGAAATAAATATTTCCGCTGTAAATTTGAAGGTTGCGAAGAAGCATTCTATCATCCAGTGAGACGACTGGTACACATGCGAAATCATACTGGAAAGAAAACTTACTTCTGCGATGTCGATGGATGTAATAAACAATTAACGACCAAAACTGGTATCTACGaacataagaaaaaaatgcatttgcttTTAAAGAAATGA
Protein Sequence: MDEIITVHQCLFCPQTFGSASAKDNHILQHFAQETCRDCDQNLIRIGSNLYTLHNAVTCIKVDFKSEEPVEECQQVTKQFDEIDSIPNDTTLNPLFVEDIETKPDINALHEQFMLMDANNLAESCDTDLKQHENIEPMPHSNQVDDSLGASESKSNQSSESNDCDICGKVFKNKSFLKKHKSITHSAPGHFHCEPCQIVFTRKDSLRKHNRVKHDPSYVTYKCAYCRHAVFTQISSLEKHLPKCKKRTEKLESEGGAGTSKDNENIGNELIDVNLIKNEDDISTKDLQNNQPSSFTAIQNSNDALPININEAIYVKKKPTENDNKCDVCFKMFFDKNNVRRHKMSVHGVSSGSYPCTSCKEVFITASDLIDHKTKCKKETNDNAGHECTICKMLFSQKQGLSRHMQLEHDPNVEKFRCKLCSRVYTDKSKFDNHPCGKSRKSAPRNRQNSSQNIVCDICGRTLSGKIPFRNHQIRFHSPAGTNVCVCRKIFSTAEALDEHRAICEFKKISRFPHIHLGKTFQCHLCQKVVKEIDTLKRHMRRTHLPNENLKCKTCGMICQTNTELRNHYETMHLKILDHLCSLCGRGFKSKQSLRYHMYWHTGNKYFRCKFEGCEEAFYHPVRRLVHMRNHTGKKTYFCDVDGCNKQLTTKTGIYEHKKKMHLLLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00367829;
90% Identity: iTF_00367829;
80% Identity: iTF_00367497;