Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:1658495-1660915[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.067 2.5 8.4 0.6 1 23 8 30 8 30 0.96

2 15 3.4e-06 0.00013 21.9 1.4 3 23 164 185 163 185 0.95

3 15 0.0012 0.045 13.9 2.5 1 23 191 214 191 214 0.94

4 15 0.19 7.1 7.0 0.6 1 20 221 241 221 241 0.95

5 15 0.0012 0.044 13.9 1.9 2 23 325 347 324 347 0.96

6 15 0.0018 0.066 13.4 0.1 1 20 354 373 354 375 0.94

7 15 0.00025 0.0093 16.0 1.7 1 23 386 409 386 409 0.96

8 15 0.021 0.76 10.0 2.0 1 19 416 434 416 434 0.96

9 15 0.013 0.47 10.7 0.1 2 23 455 477 454 477 0.95

10 15 1.2 43 4.5 0.0 5 20 486 501 485 503 0.91

11 15 5.6e-05 0.0021 18.1 2.8 1 23 521 544 521 544 0.98

12 15 0.0036 0.13 12.4 2.5 2 23 551 573 550 573 0.96

13 15 0.00026 0.0095 16.0 2.5 3 23 581 601 579 601 0.94

14 15 0.073 2.7 8.3 1.2 1 23 607 631 607 631 0.98

15 15 0.81 30 5.0 0.8 1 23 637 662 637 662 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.067	2.5	8.4	0.6	1	23	8	30	8	30	0.96
2	15	3.4e-06	0.00013	21.9	1.4	3	23	164	185	163	185	0.95
3	15	0.0012	0.045	13.9	2.5	1	23	191	214	191	214	0.94
4	15	0.19	7.1	7.0	0.6	1	20	221	241	221	241	0.95
5	15	0.0012	0.044	13.9	1.9	2	23	325	347	324	347	0.96
6	15	0.0018	0.066	13.4	0.1	1	20	354	373	354	375	0.94
7	15	0.00025	0.0093	16.0	1.7	1	23	386	409	386	409	0.96
8	15	0.021	0.76	10.0	2.0	1	19	416	434	416	434	0.96
9	15	0.013	0.47	10.7	0.1	2	23	455	477	454	477	0.95
10	15	1.2	43	4.5	0.0	5	20	486	501	485	503	0.91
11	15	5.6e-05	0.0021	18.1	2.8	1	23	521	544	521	544	0.98
12	15	0.0036	0.13	12.4	2.5	2	23	551	573	550	573	0.96
13	15	0.00026	0.0095	16.0	2.5	3	23	581	601	579	601	0.94
14	15	0.073	2.7	8.3	1.2	1	23	607	631	607	631	0.98
15	15	0.81	30	5.0	0.8	1	23	637	662	637	662	0.94

Sequence Information

Coding Sequence: ATGGATGAAATTATAACAGTTCatcaatgtttgttttgtccGCAAACTTTTGGAAGTGCCAGTGCAAAAGATAATCACATTTTGCAGCATTTTGCGCAAGAAACCTGCAGAGATTGTGACCAAAATTTGATTCGAATCGGCAGTAATTTGTACACTCTACACAATGCCGTAACATGTATTAAAGTTGATTTCAAATCAGAAGAACCAGTTGAAGAATGTCAACAGGTAACCAAacaattcgatgaaattgaCTCTATACCCAATGATACGACATTGAATCCATTGTTTGTAGAAGATATTGAAACAAAGCCCGATATAAATGCCTTGCATGAACAATTTATGTTGATGGATGCAAACAATTTGGCAGAAAGTTGCGATACTGATCTGaaacaacatgaaaatattgaaccaATGCCACATTCAAATCAAGTGGACGACTCACTTGGTGCATCTGAATCGAAAAGCAACCAAAGTAGTGAGTCCAATGACTGCGATATCTGCGGAAAAGTCTTCAAGAACAAATCATttctaaaaaaacacaaatccaTAACACACAGTGCACCCGgccattttcattgtgaacCATGTCAAATAGTTTTTACACGAAAAGACTCGCTCCGTAAACATAATCGCGTTAAACATGATCCGAGCTATGTGACATACAAATGTGCCTATTGTCGTCATGCTGTATTCACCCAAATATCATCACTGGAAAAACATCTTCCCAAATGCAAAAAACGAACGGAGAAATTAGAGAGTGAAGGTGGTGCTGGTACTTCAAAGGACAATGAGAATATTGGAAATGAACTTATCGAtgttaatttaataaaaaacgaGGATGATATTTCTACAAAAGATCTGCAAAATAATCAACCATCATCATTCACCGCCATTCAAAATAGTAATGATGCTCTTCCGATCAACATCAATGAAGCGATATATGTTAAGAAAAAACCAACTGAAAACGACAACAAATGTGATGTATGCTTTAAGATGTTCTTCGACAAAAATAATGTCCGGCGACATAAAATGTCTGTTCATGGCGTATCATCTGGATCGTACCCGTGCACTAGTTGTAAAGAAGTGTTCATAACCGCCAGCGATTTGATCGATCACAAaacgaaatgtaaaaaagaaacgaacgaCAATGCTGGTCATGAATGTACTATAtgcaaaatgttattttcacaaaaacaaGGCCTTTCACGTCATATGCAGCTAGAGCATGATCCAAACGTTGAAAAGTTTCGGTGTAAATTATGCAGCCGTGTTTATACCGATAAATCGAAATTCGATAATCATCCATGTGGAAAAAGTAGAAAGTCAGCCCCCAGGAATCGTCAAAATAGCTCACAAAATATTGTATGTGATATTTGTGGAAGAACATTGAGCGGAAAAATACCATTCCGAAATCACCAAATCAGATTTCACAGTCCAGCCGGAACGAATGTCTGTGTCTGTAGAAAGATTTTTAGCACAGCTGAAGCGCTTGACGAACATCGGGCCATATGtgaatttaagaaaattaGCCGATTTCCACATATACATTTGGGCAAAACATTCCAATGTCATTTATGCCAGAAAGTTGTTAAAGAAATAGACACGTTGAAACGACATATGCGACGAACACACCTGCCAAATGAAAACTTAAAATGTAAAACGTGTGGAATGATCTGTCAGACCAATACTGAACTTCGAAATCATTATGAGACAATGCACTTGAAAATTCTGGACCATCTATGTAGTTTGTGTGGAAGGggatttaaatcaaaacaatcgcTAAGGTATCACATGTATTGGCACACAGGAAATAAATATTTCCGCTGTAAATTTGAAGGTTGCGAAGAAGCATTCTATCATCCAGTGAGACGACTGGTACACATGCGAAATCATACTGGAAAGAAAACTTACTTCTGCGATGTCGATGGATGTAATAAACAATTAACGACCAAAACTGGTATCTACGaacataagaaaaaaatgcatttgcttTTAAAGAAATGA
Protein Sequence: MDEIITVHQCLFCPQTFGSASAKDNHILQHFAQETCRDCDQNLIRIGSNLYTLHNAVTCIKVDFKSEEPVEECQQVTKQFDEIDSIPNDTTLNPLFVEDIETKPDINALHEQFMLMDANNLAESCDTDLKQHENIEPMPHSNQVDDSLGASESKSNQSSESNDCDICGKVFKNKSFLKKHKSITHSAPGHFHCEPCQIVFTRKDSLRKHNRVKHDPSYVTYKCAYCRHAVFTQISSLEKHLPKCKKRTEKLESEGGAGTSKDNENIGNELIDVNLIKNEDDISTKDLQNNQPSSFTAIQNSNDALPININEAIYVKKKPTENDNKCDVCFKMFFDKNNVRRHKMSVHGVSSGSYPCTSCKEVFITASDLIDHKTKCKKETNDNAGHECTICKMLFSQKQGLSRHMQLEHDPNVEKFRCKLCSRVYTDKSKFDNHPCGKSRKSAPRNRQNSSQNIVCDICGRTLSGKIPFRNHQIRFHSPAGTNVCVCRKIFSTAEALDEHRAICEFKKISRFPHIHLGKTFQCHLCQKVVKEIDTLKRHMRRTHLPNENLKCKTCGMICQTNTELRNHYETMHLKILDHLCSLCGRGFKSKQSLRYHMYWHTGNKYFRCKFEGCEEAFYHPVRRLVHMRNHTGKKTYFCDVDGCNKQLTTKTGIYEHKKKMHLLLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00367829;
90% Identity: iTF_00367829;
80% Identity: iTF_00367832;