Cnas008607.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:1656003-1658183[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0019 3.3 7.6 0.0 18 50 149 184 141 187 0.76 2 8 0.74 1.3e+03 -0.8 0.1 27 48 190 211 188 214 0.84 3 8 0.038 65 3.4 0.0 26 44 219 237 212 241 0.91 4 8 0.015 26 4.7 0.0 22 44 317 339 312 346 0.87 5 8 0.00025 0.44 10.4 0.0 26 48 383 405 369 409 0.86 6 8 0.00042 0.73 9.6 0.2 2 30 424 455 423 468 0.84 7 8 0.031 53 3.7 0.3 26 49 517 540 514 544 0.89 8 8 0.37 6.5e+02 0.2 0.1 27 49 547 569 542 570 0.85
Sequence Information
- Coding Sequence
- ATGGATGAAATTAGAACAGttcatcaatgtttgttttgtccGCAAACATTTGGAAGTGCCAGTGAAAAAGATGATCACATTTTGCAGCATTTTGCGCAAGAAACCTGCAGAGATTGTGACCAAAACTTGATTCGAATTGGCAGTAATTTGTACACTCTACACAATGCCGTAACATGTATTAAAGTTGATTTCAAATCAGAAGAACCAGTTGAAGAATGTCAACAGTTAACCAAacaattcgatgaaattgaCTCTATACCCAATGATACGACATTGAATCCATTgtttataaaagaaattgaaacaaagcCCGATATAAATGCCTTGAATGAACAATTAATCTTGATGGATGCAAACAATTTGGCAGAAAGTTGCGGTACTGATCTCAAACAACATGAAAACATTGAACCAATGCCATATTCGAATCACTCACTTGGTGCATCTGAATCGAAAAGCAACCAAAATATTGAGTCCAATGACTGCGATATCTGCGGAAAAGTCTTCAAGAACCAATCATTTCTAAAAAGACACAAATCCATAACACACAGTGCACCTggccattttcaatgtgaaccATGTCAAATAGTTTTTACACGAAAAGACTCGCTTCGAAAACATAACCGCATTAAACATGATCCGAGCTATGTGACATACAAATGTGCCTATTGTCATGCTGTATTCTCCCAAATATCCTCACTGGAAAAACATCTTCCCAAATGCAAAAAACGAACGGAGAAATTAGAGAGTGAAGGTGGTGCTGGTACTTCAAAGGACAGTGaaaatattggaaatgaaCTTATCGAtgttgatttaataaaaaacgaGGATGACATTTCCACAAAAGACCTGCAAAATAATCAACCATCATCATTCACCGCCATTCAAAACAGTAATGATGCTCTTCCGATCAACATCAATGAAGCGATTTATGTTAAGAAAAAACCAACTGAAAACGACAACAAATGTGATGTATGCTTTAAGATGTTCTTCGACAAAAATAATGTCCGGCGACACAAAATGTCCGTTCATGGCCTATCATCTGGACCGTATCCGTGCACTAGTTGTAAAGAGGTGTTCATAACCGCCAGCGATTTGATCGATCACAAaacgaaatgtaaaaaagaaacgaacgaCAATGCTGGTCATGAATGTCCTATAtgcaaaatgttattttcacaaaaatatagcCTTTTACGTCATATGCAGCTAGAGCATGATCCAAACGTTGAAAAGTTTCGCTGTAAATTATGCAGCCGTGTTTATACCGATAAATCGAAATTCGAAAATCATCCATGTGGAAAAAGTAGAAAATCAACCCCCAGGAATCGTCAGAATAGCTCACAGAATATTGTATGTGATATTTGTGGAAGAACATTGAGCGGAATATCATTTCGAAATCATCAAATCAGGTTTCACAGTCCAGCCGGAACGAATGTCTGTATCTGTAGAAAGATTTTTAGCACAGCTGAAGCGCTTGACGAACATCGTGTCATATGtgaatttaagaaaattaGCCGATTTCCACATATACATTTGGGCAAAACATTCCAATGTCATTTATGCCAGAAAGTTGTTAAAGAAATAGACACGTTGAAACGACATATGCGACGAACACACCTGCCAAATGAAAACTTAAAATGTAAAACGTGTGGAATGATCTGTCAGACAAATTCTGAACTTCGAAATCATTATGAAGCAATGCACTTGAAAATTCTGGACCATCTATGTAGTTTGTGTGGAAGGggatttaaatcaaaacaatcgcTAAGGTATCACATGTATTGGCACACaggaaataaatattttcgctGTAAATTTGAGGGTTGCGAAGAAGCATTCTATCATCCAATGAAGCGACTGGTACACATGCAAAATCATGCTGCAAAGAAAACTTACTACTGCGATGTCGATGGATGTAATAAACAATTAAACTCCAAAAATGGTATCAAAATACATAAGAAAAAAGTACATTTGCTTGAGAAGAAATga
- Protein Sequence
- MDEIRTVHQCLFCPQTFGSASEKDDHILQHFAQETCRDCDQNLIRIGSNLYTLHNAVTCIKVDFKSEEPVEECQQLTKQFDEIDSIPNDTTLNPLFIKEIETKPDINALNEQLILMDANNLAESCGTDLKQHENIEPMPYSNHSLGASESKSNQNIESNDCDICGKVFKNQSFLKRHKSITHSAPGHFQCEPCQIVFTRKDSLRKHNRIKHDPSYVTYKCAYCHAVFSQISSLEKHLPKCKKRTEKLESEGGAGTSKDSENIGNELIDVDLIKNEDDISTKDLQNNQPSSFTAIQNSNDALPININEAIYVKKKPTENDNKCDVCFKMFFDKNNVRRHKMSVHGLSSGPYPCTSCKEVFITASDLIDHKTKCKKETNDNAGHECPICKMLFSQKYSLLRHMQLEHDPNVEKFRCKLCSRVYTDKSKFENHPCGKSRKSTPRNRQNSSQNIVCDICGRTLSGISFRNHQIRFHSPAGTNVCICRKIFSTAEALDEHRVICEFKKISRFPHIHLGKTFQCHLCQKVVKEIDTLKRHMRRTHLPNENLKCKTCGMICQTNSELRNHYEAMHLKILDHLCSLCGRGFKSKQSLRYHMYWHTGNKYFRCKFEGCEEAFYHPMKRLVHMQNHAAKKTYYCDVDGCNKQLNSKNGIKIHKKKVHLLEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00367473; iTF_00367832; iTF_00367497;
- 90% Identity
- iTF_00367473; iTF_00367832; iTF_00367497;
- 80% Identity
- iTF_00367473;