Cgig004272.1
Basic Information
- Insect
- Colletes gigas
- Gene Symbol
- bab2
- Assembly
- GCA_013123115.1
- Location
- WUUM01000008.1:490905-517252[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.5e-13 8.8e-10 38.0 0.0 1 39 382 421 382 425 0.90 2 4 1.8e-12 3.4e-09 36.1 0.1 2 39 437 474 436 477 0.94 3 4 6.4e-19 1.3e-15 56.7 0.0 2 45 492 536 491 536 0.97 4 4 9.8e-20 1.9e-16 59.3 0.1 1 42 543 585 543 586 0.97
Sequence Information
- Coding Sequence
- ATGGTAAGCGGCGGCATGGCCGGGCAGCATTACTGCCTGCGCTGGAACAACTACCAGTCGAACATGACGTCCGTTTTCCACCAGCTCCTGCAGACGGAAGCATTCGTGGACGTCACCCTGGCATGCAACGAAGCTTCCCTGAAGGCGCACAAGGTGGTATTGTCGGCGTGCAGTTCCTACTTTCAGAAGCTTTTGCTCTCGAATCCCTGCAAGCATCCGACCATCATCATGCCGCAGGACGTTTGCTTCAACGACCTGAAATTCATCATAGAGTTTGTCTACAGGGGTGAAATCGACGTCTCGCAAGCAGAACTTCAGTCGCTGTTGAAAACGGCCGATCAGCTGAAGATAAAGGGCCTCTGCGAGGTGCCGGAAAGCAGGGACGGTCCGCCATCGGTCAGCCTGAGCTCGCCACCCCGTGAACCCGGCACGCCTAGGATAAATTTCACCAAATTGAAGAGGCATCATCCGCGATACAAGAGAGCCAGAACCACGTTCGAACCACGGGCGACGGACTCGAGACACTACGACAGATACAAAGAGGAGGAGTCGAACGACAATTATAATCGTGAGAACAAAGAGAACCACAGGGACTGGCAGGCCGAAGATGAAGATTGCACGGAGGGAACGACAGCAGCAATAGTATTGGAAACTTGCCAGCggaacaacagcaacaacaacaacaacaacggtAACGGTGCtaacaacaataacaacgGTGACATGTTTTGTCATACAGGACTCGGCCATTACGGTCATCATCCGGATCCTGGGGAGGTGGATCTGCCCCCAGAGACCCAACCTACGCCACCCAGTGCCACCTTGGTTGGCACTACGATCACCCATCTGAGGGACCCGGATCATCATTCTACAGAGATTCAAACCTGTGACAGTGTGAAGATTAAGTTCGAAACGTTGCACACGATGGACTCGTCGGATACCATCGACATCGACAGCCACATGTCGGATCGGGCGAGCGTCAGCTCGAAGAACGCGGCCGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTCGGATTAATGCCCTCTGGAAGTTCCGTTCACTCCGATTCCGGTGAAAATAACTCGAGGGGTCATTCCGGCCAGTCGAGTTCCCATCACCATGGCTCCAAGTCGTGGACGCAAGAAGACATGGACGCCGCGTTGGAAGCGTTAAGGAATCACAACATGAGTCTCACGAAAGCCTCCGCTACTTTCGGTATACCCTCGACGACGCTGTGGCAAAGGGCTCACCGGTTAGGCATAGACACACCAAAAAAGGACGGACCAACGAAGTCGTGGAGCGACGAGAGTTTGAACAACGCGCTCGAGGCGTTGCGAACTGGAACGATCTCGGCGAACAAAGCTTCGAAAGCGTTCGGTATACCTTCCAGCACATTGTACAAAATCGCGAGGAGAGAAGGGATCAGATTGGCCGCGCCCTTCAACGCGAGTCCCACCACTTGGTCACCGGCCGACCTGGACCGCGCTTTGGAAGCGATTAGGTCAGGTCAGACGTCCGTGCAGAGGGCATCGACGGAGTTCGGTATACCCACGGGGACGCTCTACGGTAGATGTAAAAGGGAAGGAATCGAACTGAGCAGGAGTAATCCTACGCCGTGGAGCGAAGACGCTATGACCGAAGCTCTGGAAGCCGTCAGATTGGGGCAAATGAGCATCAATCAAGCAGCTATTCACTATAATCTACCCTACTCTTCGTTGTACGGTCGTTTCAAGAGGGGGAAATACGAAGAACCCGTTGTCGGCGAAATATCGCAAGACGGAAGCAGTCCGCATTTCCATCAGAGTCCAAATCAGAATCATTCGTCCGTTGTTCCGGATCAAATGACGTACCAAGGCAGCTGA
- Protein Sequence
- MVSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEESNDNYNRENKENHRDWQAEDEDCTEGTTAAIVLETCQRNNSNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQTCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGEISQDGSSPHFHQSPNQNHSSVVPDQMTYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- iTF_00360994; iTF_00360127;