Basic Information

Insect: Colletes collaris
Gene Symbol: -
Assembly: GCA_030068185.1
Location: JASGYR010000374.1:19426625-19431734[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.8e-13 1.7e-09 38.0 0.0 1 39 353 392 353 396 0.90

2 4 2.3e-12 6.6e-09 36.1 0.1 2 39 408 445 407 448 0.94

3 4 8.3e-19 2.4e-15 56.8 0.0 2 45 463 507 462 507 0.97

4 4 1.3e-19 3.7e-16 59.4 0.1 1 42 514 556 514 557 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.8e-13	1.7e-09	38.0	0.0	1	39	353	392	353	396	0.90
2	4	2.3e-12	6.6e-09	36.1	0.1	2	39	408	445	407	448	0.94
3	4	8.3e-19	2.4e-15	56.8	0.0	2	45	463	507	462	507	0.97
4	4	1.3e-19	3.7e-16	59.4	0.1	1	42	514	556	514	557	0.97

Sequence Information

Coding Sequence: ATGGAAGTTCGATCACCCTGCTGCAACCAATACCACGGAACTCACGGATTGTCGGGCTCGAAGATTCGCGGACATTTCAACGCGGTTATACGTATCCGTTCGCAGCCGTCGGGTGAGAGGAAGCGTGTGAAAGAGACAAGGATAGACGAAGAGAGAACGAGAAACGGGGGGGCGGAGGGGCGAAGAGAGATGCATAGAGCAACAGAGAGACAGGATGTGTGCGTGGAAACGTCGCTGTTGAAAACGGCCGATCAGCTGAAGATAAAGGGCCTCTGCGAGGTGCCGGAAAGCAGGGACGGTCCGCCATCGGTCAGCCTGAGCTCGCCACCCCGTGAACCCGGCACGCCTAGGATAAATTTCACCAAATTGAAGAGGCATCATCCGCGATACAAGAGAGCCAGAACCACGTTCGAACCACGGGCGACGGACTCGAGACACTACGACAGATACAAAGAGGAGGAGTCGAACGACAATTATAATCGTGAGAACAAAGAGAACCACAGGGACTGGCAGGCCGAAGATGAAGATTGCACGGAGGGAACGACAGCAGCAATAGTATTGGAAACTTGCCAGCggaacaacagcaacaacaacaacaacaacggtAACGGTGCTAACAACAATAACAACGGTGACATGTTTTGTCATACAGGACTCGGCCATTACGGTCATCATCCGGATCCTGGGGAGGTGGATCTGCCCCCAGAGACCCAACCTACGCCACCCAGTGCCACCTTGGTTGGCACTACGATCACCCATCTGAGGGACCCGGATCATCATTCTACAGAGATTCAAACCTGTGACAGTGTGAAGATTAAGTTCGAAACGTTGCACACGATGGACTCGTCGGATACCATCGACATCGACAGCCACATGTCGGATCGGGCGAGCGTCAGCTCGAAGAACGCGGCCGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTCGGATTAATGCCCTCTGGAAGTTCCGTTCACTCCGATTCCGGTGAAAATAACTCGAGGGGTCATTCCGGCCAGTCGAGTTCCCATCACCATGGCTCCAAGTCGTGGACGCAAGAAGACATGGACGCCGCGTTGGAAGCGTTAAGAAATCACAACATGAGTCTCACGAAAGCCTCCGCTACTTTCGGTATACCCTCGACGACGCTGTGGCAAAGGGCTCACCGGTTAGGCATAGACACACCAAAAAAGGACGGACCAACGAAGTCGTGGAGCGACGAGAGTTTGAACAACGCGCTCGAGGCGTTGCGAACTGGAACGATCTCGGCGAACAAAGCTTCGAAAGCGTTCGGTATACCTTCCAGCACGTTGTACAAAATCGCGAGGAGAGAAGGGATCAGATTGGCCGCGCCCTTCAACGCGAGTCCTACCACTTGGTCACCGGCCGACCTGGACCGCGCTTTGGAAGCGATTAGGTCAGGTCAGACGTCCGTGCAGAGGGCATCGACGGAGTTCGGTATACCCACGGGGACGCTCTACGGTAGATGTAAAAGGGAAGGAATCGAACTGAGCAGGAGTAATCCTACGCCGTGGAGCGAAGACGCTATGACCGAAGCTCTGGAAGCCGTCAGATTGGGGCAAATGAGCATCAATCAAGCAGCTATTCACTATAATCTACCCTACTCTTCGTTGTACGGTCGCTTCAAGAGGGGGAAATACGAAGAACCCGTTGTCGGCGAAATATCGCAAGACGGAAGCAGTCCGCATTTCCATCAGAGTCCAAATCAGAATCATTCGTCCGTTGTTCCGGATCAAATGACGTACCAAGGCAGCTGA
Protein Sequence: MEVRSPCCNQYHGTHGLSGSKIRGHFNAVIRIRSQPSGERKRVKETRIDEERTRNGGAEGRREMHRATERQDVCVETSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEESNDNYNRENKENHRDWQAEDEDCTEGTTAAIVLETCQRNNSNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQTCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGEISQDGSSPHFHQSPNQNHSSVVPDQMTYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: iTF_00360823;