Ccol006765.1
Basic Information
- Insect
- Colletes collaris
- Gene Symbol
- MBD-R2
- Assembly
- GCA_030068185.1
- Location
- JASGYR010000078.1:41023767-41030918[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1 2.2e+04 -4.0 0.0 45 62 402 419 401 431 0.74 2 2 4.2e-17 2.2e-13 50.4 0.3 6 69 544 607 539 615 0.90
Sequence Information
- Coding Sequence
- ATGAAGCGGCGGCGTATACCGCGGTCGCGTGGTAAAAGAATACCGCCTGTGGGGGCGATGAGAATGGCGCGCAAATGTTGTGTGCGTAGCTGCGAGGCTGATGTACAAGAAGCGCGTGCTAAGGGGTTACCGCTTCATAAATTTCCAAAGGATATTGCTCTAAGGAGCAGGTGGTTGACCAGTGGTGGATTTGAAGCGAGTTTCAAACCTTCACCGGGTCAGGTTGTCTGCCATAGACATTTTAAACGAGCTGATTACGAAGCCGCTAAGGGGCATAAGTTACTTCTACGTAAAGGCAGTGTTCCATCGGTTTTTGCAGATTATGATAATCATCCGGATCCCGTGATTATGTCTGTGAAATCATCAACTTCGTATGCACAGGAAGATCTAGATCTTATtaattctgaaattttaaacttaGAACAATCTATTTTGCCACAATTATCTGAAGCAAGAACACCAAAATCAGGTAGCTGTGAAGAAACATGCTCTTCTCAACCGGATTCGTCTGCTGCCATTCTCAACTTGATAGACCCAACAGAAATAGTTGATAACGACTGCAAAGCTTTAACTGCAAAAGTAGAAACTATGTCTTCCATAAAGAAAGAAATACATGAAAATTTAGAAATGGAAGTAAATACTATGGCTGTTCAATTAGGAATTGTAGAATCAGATGTAGCAATGAAACATATACACAAAGAATTGGCTATTAAAGAAGAGTTAAAACATATTAAAATAGAAGATGAGAAAACATTTGGTAAATCAGAAGACTTAAAGGCAAAGATATTAAATCGTGATGGATTAACGTTTTTTCCTGGAGCTAAATTAGAAGCAAAAGATTTCAATGAAAAATGGTATTCGGCTAAAGTAGTTGAAACTGATTGGGAAGAAAGAGAAGTCTTGATACATTTTGACAAGTGGAGCTCAAGATTTGACGAATGGATACCTATGGATAGTTCTAGATTACGTGTGTTACAATCACAGTCAAAcgaACAAACTTGGGATCTACCATCTCCGGAAAcgaaaatgaaaggtttttcAGTGGGAGAAAGGATTCTCGCTACGTGGGCCGACGGGAGAAAATATCCAGCGAAAGTAAATGCGGTGTTAGGAAATGaTAGATACGATGTACTCTTTGACGATGGATACACAAAAACTGTTAAATCGTCAAAAATGACAAAAATCGCTGCAACATCCACAAAGCAACTGTCTCAAACTGAAGAGTACATAGGAAGTAAACAAGAAAGAAGAGATAAGAAACGGAAGCATATAGTAATGGAGTTGTTTCATACACACTCTCGTAAACGGTTAAAAAATGAAGCAGATAAATTAACAAAAAAGGAAGGAGTCGTAATGAATGAAAATGGTGATTGCtttcaagaaaataaaattgatttagaCGGTACTTTGTTTGGTCCATGTTATGATCCAGGCACAGATTTGTTGCGAGGATTTGATACTAACGTATCAAAAGTGAAAACTTATGTAAAAAAGAATAAGAAagaaatatctaataaatatgAAATAGACCAGGAGGAAGATGTAGGACCTGAATGGATAGATGGAGAGCCTCAGGGCACTGAATCTTATATAGTAGATGGAAATGATGGACCACGTCGCTCAATAATAGTCGCGGATAAAAGATTACCGCCTGGATGGCAGAAACATTTTACTCAAAGAAAAGCTGGTACATCCGCGGGCAAATGGGATGTCTTATTTCTCCATAAATCAAGCGGGAAGAAGTTCAGGTCGCGAAATGATATCAGAGCTTTCATGGAAAATCAGGGACAATTTGACTTCGATCcagaaaaatttgatttttgtatTCATCGAAAAAAGAGAAGCTATGGGCATAAATTAAAACAAGAAATTGTCACAGATGTACCCAAAAAAATTAAGACCTTATTACCGAAAACAAAGACAACACCAGTAATGGATTCGTTGCTTATATCAGCAAATACATCAGTTACAACCGTAGTACCTGCACCAACAACGTCAATTACGGATGGCGcTGTTTTTATTGGCGGGTTACGTGTAGAAATGGAGGATAGTGCTTACAAATGTCCGAAACAAGGATGTAATAAAACATTTAGGAAGGAAAATCTTTTACAAATGCACATAAAACATTATCATCCGgaatattcaaaatttttgGGATCTACTCCAAATGTTGCGGACTTGGCTTACGCGAGAACAATTGGAGAATCTATCGATGATATTATTCCGAGAAAATCAAATAATTcattagaaaaatataataaattagcaAAGAAAAAGTCTATTCAAGATAAACCACTTTATGCTGCATCGCTATCAGTAACAAGTTCTACTCAACCTGCATCTCCAATAGTTTTGCCAACAGTCTCAGAAGTAGAGGACGAATTGGACCAAATAGAGCAATGTAACGAAGTACAAGCAGAAGAGGTTAAGATAGAAAGAATTTCTCCCGTTTCTAGTCATAGTATAGATATGGATgatgaaaatgagaaaaaacgaGAAGATTCGTGTGCAATGTCACCTGGAACATTATTTGATATGAAAATTAGAGAAGAAAAAACGCAAAGTGGTATTAAAACTCTTCTTCCAGTGAGGCCGACTACGTCGTCAGAAATACAGAGAATCGATAGATCGAAATCGTTGGATGAGAGTATTCACATCGATAGAATGAAAGGTCAAAGAAAACGACAATTATCAGAGTATAGTTCCGACGTTCCAAGTAGGGGTAAAAGGCGACACGGTATGCAAGACATTACAGATGATTATGGCGATCTAGACGACAGTGCTATGGATACTGAAGGACCGACAACGCTTGTGTATAGATATAGTCGTCGAAAATCAGATTCAAGAAGCGATGAAAATAGTCAAAGTAGTCAACTAAACGATTCTCATCTTGAAAAAGATGATCCCTCGAAAGGGGAGATTACTAAAAGAGATACAAATAATGATGGGGAAgaaaatgaaGGAATTATGATGATGATTAACGGTGAAATGATAAAGGTGGAACAACTACGTagagaagaaataataaattgtacCTGTGGATTTATGGAAGAAGACGGCTTAATGATACAATGTGATCTTTGTCTGTGTTGGCAACATGGTCATTGTAATGCAATAGAGAAAGAAAAAGATGTTCCCGAAAAATATGTTTGTTATATTTGTCGGAATCCATATCGACAGCGACCATCCAAAATGTATTTTCACGATCAAGATTGGATGAAGGAGGGCAAACTACCCACATTACCTAACCGAACAAAAAATCAATATACAGTTAATCAAAGGACAGCTATGTTAAAGCGTTCTTATGATTTAGTTGCAGCTCTCTTGCAGATACAACAAGTACTGCACAGTTTGAGAATAAAAGTTAACGTGGCTCAAAAAAAAGATCATCCAAAATTATATCTTTGGGCAAAAAACTGGGAGAAGATGGAAATACAAAAACCAGACGTAACGCCAGTACCAATTATAGAAATCACGAAAGTAACGAACGATTCTGTGGACACCGTAACTGATGCATCTCGTAGAGTTGAAGTAAAGACGGAAACCAAGTTTACCGTAAAAGATGATCATGATGAAAAATCAATAGCTTCGGATTcagaattaatgaaaattttggAAGAAGATAATACAACTAACGATGAATCTAAAGTTCTCTCTAAGAAAGAAGATTCAACGAATCAAAATAGGAGTCACATTCTTCTCAATGCTCTCACAAAAAGTACTACTTCAGGGGAGAAGTGTAACACTTCGGTAACCTCGGACGAGAAAGTAGATACAGatttattatcAAATCAAACGGATGTGTCCGATAACGATGTATCTGAAACAACTATATCAGCGAATCAAATCCACGAAGAATTAAATGAGCACGATATATCAACATTACAGCCTTTTATACCGCAACCAGAAGCACCAATTGATCCAGGAGAATGTCGAATGCGATTATTAGAACACATAGAGCATTTTCAAAATCACATAGACGCAAAATTAACATCCATTGAAGCACAAGTTTGCGCATTAGAAGCCATGGATCCTGAAGATGTTGTACCTATCCCAGATGTTCAGCCTCGAACCAAACAAACAGTTCAAATGCTTCTTCGAGATTTAAATATAGTTCGAAAATTAGCTGCTTTGTGTTAA
- Protein Sequence
- MKRRRIPRSRGKRIPPVGAMRMARKCCVRSCEADVQEARAKGLPLHKFPKDIALRSRWLTSGGFEASFKPSPGQVVCHRHFKRADYEAAKGHKLLLRKGSVPSVFADYDNHPDPVIMSVKSSTSYAQEDLDLINSEILNLEQSILPQLSEARTPKSGSCEETCSSQPDSSAAILNLIDPTEIVDNDCKALTAKVETMSSIKKEIHENLEMEVNTMAVQLGIVESDVAMKHIHKELAIKEELKHIKIEDEKTFGKSEDLKAKILNRDGLTFFPGAKLEAKDFNEKWYSAKVVETDWEEREVLIHFDKWSSRFDEWIPMDSSRLRVLQSQSNEQTWDLPSPETKMKGFSVGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYTKTVKSSKMTKIAATSTKQLSQTEEYIGSKQERRDKKRKHIVMELFHTHSRKRLKNEADKLTKKEGVVMNENGDCFQENKIDLDGTLFGPCYDPGTDLLRGFDTNVSKVKTYVKKNKKEISNKYEIDQEEDVGPEWIDGEPQGTESYIVDGNDGPRRSIIVADKRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRSRNDIRAFMENQGQFDFDPEKFDFCIHRKKRSYGHKLKQEIVTDVPKKIKTLLPKTKTTPVMDSLLISANTSVTTVVPAPTTSITDGAVFIGGLRVEMEDSAYKCPKQGCNKTFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIDDIIPRKSNNSLEKYNKLAKKKSIQDKPLYAASLSVTSSTQPASPIVLPTVSEVEDELDQIEQCNEVQAEEVKIERISPVSSHSIDMDDENEKKREDSCAMSPGTLFDMKIREEKTQSGIKTLLPVRPTTSSEIQRIDRSKSLDESIHIDRMKGQRKRQLSEYSSDVPSRGKRRHGMQDITDDYGDLDDSAMDTEGPTTLVYRYSRRKSDSRSDENSQSSQLNDSHLEKDDPSKGEITKRDTNNDGEENEGIMMMINGEMIKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEKEKDVPEKYVCYICRNPYRQRPSKMYFHDQDWMKEGKLPTLPNRTKNQYTVNQRTAMLKRSYDLVAALLQIQQVLHSLRIKVNVAQKKDHPKLYLWAKNWEKMEIQKPDVTPVPIIEITKVTNDSVDTVTDASRRVEVKTETKFTVKDDHDEKSIASDSELMKILEEDNTTNDESKVLSKKEDSTNQNRSHILLNALTKSTTSGEKCNTSVTSDEKVDTDLLSNQTDVSDNDVSETTISANQIHEELNEHDISTLQPFIPQPEAPIDPGECRMRLLEHIEHFQNHIDAKLTSIEAQVCALEAMDPEDVVPIPDVQPRTKQTVQMLLRDLNIVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00866702;
- 90% Identity
- iTF_00360902;
- 80% Identity
- iTF_00360263;