Basic Information

Insect: Chymomyza procnemis
Gene Symbol: L
Assembly: GCA_035046065.1
Location: JAWNOJ010000023.1:29227638-29236381[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1e-05 0.00074 19.8 2.9 1 23 166 188 166 188 0.98

2 18 0.36 25 5.6 6.2 1 23 194 216 194 216 0.97

3 18 1.7e-07 1.2e-05 25.4 3.2 1 23 222 244 222 244 0.99

4 18 1.3e-05 0.0009 19.6 0.4 1 23 250 272 250 272 0.99

5 18 0.012 0.89 10.1 0.1 2 23 337 360 336 360 0.91

6 18 0.0039 0.28 11.7 0.2 2 23 380 402 379 402 0.95

7 18 0.063 4.5 7.9 0.7 1 23 485 507 485 507 0.97

8 18 0.0078 0.55 10.8 0.0 2 23 515 536 514 536 0.91

9 18 0.00066 0.047 14.2 0.2 1 23 544 568 544 568 0.94

10 18 6.6 4.7e+02 1.6 1.7 2 23 604 626 603 626 0.91

11 18 0.0026 0.18 12.3 1.1 1 23 679 702 679 702 0.97

12 18 0.59 42 4.9 1.2 1 23 872 896 872 896 0.94

13 18 0.0025 0.18 12.3 3.8 2 23 905 927 904 927 0.96

14 18 0.041 2.9 8.5 0.1 1 23 933 955 933 955 0.92

15 18 0.035 2.5 8.8 0.1 2 23 963 984 962 984 0.96

16 18 0.27 19 5.9 0.4 2 23 1105 1126 1105 1126 0.94

17 18 0.01 0.74 10.4 0.0 1 23 1136 1158 1136 1158 0.96

18 18 0.17 12 6.5 2.3 1 23 1165 1187 1165 1187 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1e-05	0.00074	19.8	2.9	1	23	166	188	166	188	0.98
2	18	0.36	25	5.6	6.2	1	23	194	216	194	216	0.97
3	18	1.7e-07	1.2e-05	25.4	3.2	1	23	222	244	222	244	0.99
4	18	1.3e-05	0.0009	19.6	0.4	1	23	250	272	250	272	0.99
5	18	0.012	0.89	10.1	0.1	2	23	337	360	336	360	0.91
6	18	0.0039	0.28	11.7	0.2	2	23	380	402	379	402	0.95
7	18	0.063	4.5	7.9	0.7	1	23	485	507	485	507	0.97
8	18	0.0078	0.55	10.8	0.0	2	23	515	536	514	536	0.91
9	18	0.00066	0.047	14.2	0.2	1	23	544	568	544	568	0.94
10	18	6.6	4.7e+02	1.6	1.7	2	23	604	626	603	626	0.91
11	18	0.0026	0.18	12.3	1.1	1	23	679	702	679	702	0.97
12	18	0.59	42	4.9	1.2	1	23	872	896	872	896	0.94
13	18	0.0025	0.18	12.3	3.8	2	23	905	927	904	927	0.96
14	18	0.041	2.9	8.5	0.1	1	23	933	955	933	955	0.92
15	18	0.035	2.5	8.8	0.1	2	23	963	984	962	984	0.96
16	18	0.27	19	5.9	0.4	2	23	1105	1126	1105	1126	0.94
17	18	0.01	0.74	10.4	0.0	1	23	1136	1158	1136	1158	0.96
18	18	0.17	12	6.5	2.3	1	23	1165	1187	1165	1187	0.97

Sequence Information

Coding Sequence: ATGATGgctttgaaaatgttatatcGCGGTCCCAGCTCACGTTTGGAAAACTTAATTGAGAAAATTCAAGCGACTAGGGAGATTACAAATAACGATATGTACTCGACGCACACCTCCTCCAGCTATTCGCCTTCCATATCAGATGGTACGTTGACGCCAAATTCGCATTTGCCACAAAACGAACAGGATGCGACAGGAGCTGAGCTTAAAACCAATGgcgaagctgctgctgctgctgcaggtGCAGATGCCGAGCTGCTGCCGGTGGCTGTCAAGGCCAAACGTCCTGCACATCTaacacatcatcatcatcattaccATCATCAGCAGGCGCTTAAAATTGCCAACAAGTTGCgcaaaatcaataaagaaGCCAAGCTACAGGCGGCTGGCAGTGGCGGCACTGGAGGAGCTGCAGCCACTGGCACGACCAGTAGCGCGACAAAGTTTAATAAGTTGACAGGCGAGGGCATTAAAAGCAGAAGCGACGGTTCCTATCAGTGTCAGTTTTGTGATAAATCATTTCCGCGACTCGGCTACTTGAAGCATCACGTGCAGAGCCATGCCGAACATCTACCGTTTAAATGCGAATACTGCGCCAAGTTGTTCAAGCACAAACGCTCACGTGATCGCCATAAGAAATTGCACACAAATGAGAGGAACTACAAGTGTCCGCATTGTGAGGCCGCATTCTCCAGAAGTGATCATCTAAAGATTCACATGAAAACCCACGACATTCAGAAGCCCTTCCAGTGCAGCATGTGCAACCGTGGCTACAACACCGCCGCTGCACTCACCTCGCACATGCAAAAGCACAAGAAGAATGCAGCCATACTGGCTGCCGGCGGCAATCCAAATGCGCTCAACTATAGCCCACGTTCCACTGGCTCTGCCTCAAGCAACGGTAGTCTACACAAGCGACGCTATGCGCTTGCCATGGCTTCCGACAGTAGTCCAAGTCGCCTGGAATACCCTAAGCGTGCACGTGCCACACCCACACCATTGCTGCGCTGCAGCTACTGCCCCAAGGCGGAGTTTAGTAATTTGGAGCAACTAAACGCTCACTTACAAAGCGCGCACGAGCAAGTGCCGCAAGCTAAGCCCACAGCTACCGCCGCAGAGGATGGCTTTCAGCTAAGCTGCGAATACTGCACCATGAAGTTTGGCAATATAGCTGGTCTTTTCCAACACATGAGAGCCACGCATATGGATCGTCTTAGCAGTCCCAATTCTTATTATGAGCACTTTAATCGTTTGGCCACTGCTGGCACTTTTAGTCCACGTTTGGCTTTGGAGCAGCTGCCCAAAATCAAACAGGACTTGCATAGTCCACAGCCACCGCTTAAAACTCAAACGGAAGAGGAACCCACCGACttgagcagcaacaaaagacGCAGCGCGGAGTTGGAAACGGCAACAGCAACGCCTGCAACAAATGCTGCCCCAGGTATCTTTTTCTGCAATCAATGCAATGCTGGGCTACCGGATTTCGAGAGCTTTCGCAATCATTTGAAATCGCATATAGCTGAGGGACTGCAGCTGGTATGTCCACATTGTGGCATTACTTTACCCGATCAGCCGGAGTACGAGCGTCATGTGGTTGCTCATTTTTTGATTACCAACTCGGAATATAACTGCAGCGCTAGCTGTAGCAAATCCTTTGCCAAGGCGGAGGAGCTGCAAAAGCATTTAATGGCCGAGCATGTCATAACAATGCTAAAGTGTGCGCTTTGCTCGGAACTTTGTGAATCCCAGGTGGCCATGCAGCTGCACTTAGCCTGCACGCATACCCAAGAAACCAAGCTACTGCGCTGCAGCGCCTGCATGGAACTCTTCCGTAATGAAACAGATTTTCATGTGCACGTCAAGACGCGCCATCAGCTGGCCAATGGCATGCAGGCGGCCGCTTCTGCCAACGCTAATGTGGCCAATGCCGCTTCCATGCCGACTAGCCCCTTGCAGTGCATGTTCTGCCGTGTGGTTTGTTCCTCTGAGCtggaaatgcattttcatttggcTGCACATGCGCGTCAATTTCGTTGTCCCTCCTGCCCGGAAACATTTCATGTGGAATTCCTGCTGGATCGTCATATGCAGAGTCAGCACGGTGGCGTCTTAGACGAACGCAATGCCAGCGAAAAAGACAGTTATGAGGAAGCAGCCGCTGTAAGCGCAGCCAATTCCAATGCCTTGAGTCCCATGAACAGTCTCTATGTGAATGCTTTGTTTGGTGGCAAGCCACCCATGTTGCCTGGGCTAAGCACGTCCAGCGCCAAtacgaacaacaacagcagcattaTAGACTACAATGTGGCATTTGCGGCGGCGCAGTTGCAACATAAAGGACTGTTTGCACCGCCGGCACCCACAGCCAGCTCCAAGTTCTACAGCCCGCTGCAGGTGGATACCAATGCTTTGAAGCCACAAGCTGCAGCGCATCCTGCGCTTATGTACGGTCTAAGTCAGCGTTATTTCGACACTAATCGCGCTTTAATGGAGATGTATGCGGCACAGCAGAACAAAGGTTCCAACTACTTTGCACCCAGTCCCAAGGCCACGCAGGACACAGGCGGCAGAGGCTCCAACGAGGCTGCTGCAACACCCACCAACAGTTATAGCTGCGGCATGTGCGAACGTCAGGATTTTCGCAGCGAAACGGAGCTGCATTCCCATCGCAAGATTGCGCACAACATGAAGACAGGCGTCAGCCTACGTTGTGCCTATTGTGCGGGTAACTTTAAGTCCCGCAGCGAGCTGGAGCATCATATGAAAACGTGTCACAACTCTACGGGCAAGCACAAGTGCCTTATCTGTGATGAGGTATTTCCTTCACCTGCCATATTGGCAGAGCACAAGCTGCAGCACTCCAAGGTAGGTCAATCCGGCAAGTGTTCGCACTGCGGCCAGCCCTTGCCTGATGTGGCTGCCTTTAAGGCACACTTGTCAGAACATGGTCAGAATGCTACTTCAAATGCTGGCGGCACTAGCGTTACTCCACCGGTGCAGTGCATCTGCTGTCGTCAGACTTTACATTCGGACTTTGAAATAAGCTTACATGCCAAGTTTCATACGAAATCTGGCAATAGTCTACAGGAGCCGGTATGCGCGCTCTGCCTAGAACCCTTGGAGTCCAGCTCcggcaataacaacaatgctAACAATGGCGAGCCGCCTGCGCCCGCCAAGGTTTGTGAAAAATGCTGCCGCAAACATAATCTCAATCCGAAACAACGCAAATCACAGAGCGAAGCACACTACGAGCTGCCGCCTCCAAGTGGTGCTGCTTCCGCCAGCTCTAGCTATGTGGAAAATCGCtgcaatttatgtaaaatgatGCTGCCACATGCAGCTAAGCTGCAGGAACATTTAGTGGAGCACACTTTTGCTGGCACTGAGGAACGCGGCTTTAATTGCTATATATGCTCTGCTGTCTTCACTGCGCCCGCTGGTTTGCTTAATCATATGGCCGAGCATGGACAGAATGCCAAACCTTATGATTGCAATTTGTGCTcggataagttttattttcgcGCCGAGTTGGATCATCATCAGCGGGAGCATGAGCTAAGACCAGCCGCCGTGCCACGTGCGCTAACCTTACCCAAACAAGAGCCACCAACACAAGCAGAAACGCCACCCAGCCACAATAGTCCAGGAACAACAGTTAAACAGGAGCTctttgaaaacgaaaatgaatGTAGCCCTGCTGCAGAGCCCATACAGGAGGAGGAGGAGTACATAGAAGTGGAGCAAATGCCGCATGAAACGCGCACAGCAGAGCCCATAGGCAATGCAGAACGTTCCAGTAGCAGCGCTTAA
Protein Sequence: MMALKMLYRGPSSRLENLIEKIQATREITNNDMYSTHTSSSYSPSISDGTLTPNSHLPQNEQDATGAELKTNGEAAAAAAGADAELLPVAVKAKRPAHLTHHHHHYHHQQALKIANKLRKINKEAKLQAAGSGGTGGAAATGTTSSATKFNKLTGEGIKSRSDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASSNGSLHKRRYALAMASDSSPSRLEYPKRARATPTPLLRCSYCPKAEFSNLEQLNAHLQSAHEQVPQAKPTATAAEDGFQLSCEYCTMKFGNIAGLFQHMRATHMDRLSSPNSYYEHFNRLATAGTFSPRLALEQLPKIKQDLHSPQPPLKTQTEEEPTDLSSNKRRSAELETATATPATNAAPGIFFCNQCNAGLPDFESFRNHLKSHIAEGLQLVCPHCGITLPDQPEYERHVVAHFLITNSEYNCSASCSKSFAKAEELQKHLMAEHVITMLKCALCSELCESQVAMQLHLACTHTQETKLLRCSACMELFRNETDFHVHVKTRHQLANGMQAAASANANVANAASMPTSPLQCMFCRVVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGVLDERNASEKDSYEEAAAVSAANSNALSPMNSLYVNALFGGKPPMLPGLSTSSANTNNNSSIIDYNVAFAAAQLQHKGLFAPPAPTASSKFYSPLQVDTNALKPQAAAHPALMYGLSQRYFDTNRALMEMYAAQQNKGSNYFAPSPKATQDTGGRGSNEAAATPTNSYSCGMCERQDFRSETELHSHRKIAHNMKTGVSLRCAYCAGNFKSRSELEHHMKTCHNSTGKHKCLICDEVFPSPAILAEHKLQHSKVGQSGKCSHCGQPLPDVAAFKAHLSEHGQNATSNAGGTSVTPPVQCICCRQTLHSDFEISLHAKFHTKSGNSLQEPVCALCLEPLESSSGNNNNANNGEPPAPAKVCEKCCRKHNLNPKQRKSQSEAHYELPPPSGAASASSSYVENRCNLCKMMLPHAAKLQEHLVEHTFAGTEERGFNCYICSAVFTAPAGLLNHMAEHGQNAKPYDCNLCSDKFYFRAELDHHQREHELRPAAVPRALTLPKQEPPTQAETPPSHNSPGTTVKQELFENENECSPAAEPIQEEEEYIEVEQMPHETRTAEPIGNAERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337012;
90% Identity: iTF_00338639; iTF_00337812;
80% Identity: -