Basic Information

Insect: Chymomyza fuscimana
Gene Symbol: L
Assembly: GCA_949987675.1
Location: OX465089.1:98637271-98646466[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1e-05 0.0011 19.9 2.9 1 23 137 159 137 159 0.98

2 18 0.35 36 5.6 6.2 1 23 165 187 165 187 0.97

3 18 1.7e-07 1.7e-05 25.5 3.2 1 23 193 215 193 215 0.99

4 18 1.2e-05 0.0013 19.6 0.4 1 23 221 243 221 243 0.99

5 18 0.73 76 4.6 0.1 2 23 308 331 307 331 0.88

6 18 0.0038 0.4 11.8 0.2 2 23 351 373 350 373 0.95

7 18 0.061 6.4 8.0 0.7 1 23 453 475 453 475 0.97

8 18 0.0076 0.79 10.8 0.0 2 23 483 504 482 504 0.91

9 18 0.00099 0.1 13.6 0.2 1 23 512 536 512 536 0.93

10 18 6.4 6.7e+02 1.6 1.7 2 23 572 594 571 594 0.91

11 18 0.0025 0.26 12.3 1.1 1 23 647 670 647 670 0.97

12 18 0.57 60 4.9 1.2 1 23 840 864 840 864 0.94

13 18 0.0025 0.26 12.4 3.8 2 23 873 895 872 895 0.96

14 18 0.04 4.2 8.6 0.1 1 23 901 923 901 923 0.92

15 18 0.05 5.2 8.3 0.1 2 23 931 952 930 952 0.96

16 18 0.46 48 5.2 0.3 2 23 1073 1094 1073 1094 0.94

17 18 0.01 1.1 10.4 0.0 1 23 1104 1126 1104 1126 0.96

18 18 0.17 18 6.6 2.3 1 23 1133 1155 1133 1155 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1e-05	0.0011	19.9	2.9	1	23	137	159	137	159	0.98
2	18	0.35	36	5.6	6.2	1	23	165	187	165	187	0.97
3	18	1.7e-07	1.7e-05	25.5	3.2	1	23	193	215	193	215	0.99
4	18	1.2e-05	0.0013	19.6	0.4	1	23	221	243	221	243	0.99
5	18	0.73	76	4.6	0.1	2	23	308	331	307	331	0.88
6	18	0.0038	0.4	11.8	0.2	2	23	351	373	350	373	0.95
7	18	0.061	6.4	8.0	0.7	1	23	453	475	453	475	0.97
8	18	0.0076	0.79	10.8	0.0	2	23	483	504	482	504	0.91
9	18	0.00099	0.1	13.6	0.2	1	23	512	536	512	536	0.93
10	18	6.4	6.7e+02	1.6	1.7	2	23	572	594	571	594	0.91
11	18	0.0025	0.26	12.3	1.1	1	23	647	670	647	670	0.97
12	18	0.57	60	4.9	1.2	1	23	840	864	840	864	0.94
13	18	0.0025	0.26	12.4	3.8	2	23	873	895	872	895	0.96
14	18	0.04	4.2	8.6	0.1	1	23	901	923	901	923	0.92
15	18	0.05	5.2	8.3	0.1	2	23	931	952	930	952	0.96
16	18	0.46	48	5.2	0.3	2	23	1073	1094	1073	1094	0.94
17	18	0.01	1.1	10.4	0.0	1	23	1104	1126	1104	1126	0.96
18	18	0.17	18	6.6	2.3	1	23	1133	1155	1133	1155	0.97

Sequence Information

Coding Sequence: ATGTACTCGACGCATACCTCTTCCAGCTATTCGCCTTCCATATCAGATGGCACGCTTACGCCCAATTCGCATTTGCCACAAACCGAGCAGGACACGGCAAGTGCAGAGCTTAAAACCAATGgcgaagctgctgctgctgctgctggcggaGATGCCGAGCTGTTACCCGTGGCCGTCAAGGCCAAACGCCCTGCGCACTTaacacatcatcatcatcattatcatcatcagcagGCGCTAAAAATTGCCAACAAGTTGCGCAAAATCAATAAGGAAGCCAAGCTACAAGCGGCTGGCAGTGGCGGCGTTGGAGGAGCTGCTGGAGCAGCTTCCACTGGCACGACCAGCAGCGCGACAAAGTTTAATAAGTTGACAGGCGAGGGCATTAAAAGCAGAAGCGACGGTTCCTATCAGTGTCAGTTTTGTGATAAATCATTTCCGCGACTCGGCTACTTGAAACATCACGTGCAGAGCCATGCCGAACATCTACCGTTTAAATGTGAGTACTGCGCCAAGTTGTTCAAGCACAAACGCTCACGTGATCGCCATAAGAAATTGCACACAAATGAGAGGAACTACAAGTGCCCGCATTGTGAGGCCGCATTCTCCAGAAGCGATCATCTGAAGATTCACATGAAAACCCACGACATCCAAAAGCCCTTCCAGTGCAGCATGTGCAACCGTGGCTACAACACCGCCGCTGCTCTCACCTCCCACATGCAAAAGCACAAGAAGAATGCGGCCATACTGGCTGCCGGCGGCAATCCGAACGCCCTTAACTACAGTCCACGTTCCACTGGCTCCGCCTCAAGCAACGGCAGTCTAAACAAACGACGCTATGTGCTAGCCATGGCTTCCGACAGCAGTCCCAGCCGCTTGGAATTCCCTAAACGTGCGCGTGCCACACCCACACCATTGCTGCGTTGCAGCAACTGCCCCAAGGCGGAGTTTAATAGTTTGGAGCAGCTAAACGGGCATCTGCAGAGCGCGCACGAGCAAGTACAGCAAGCTAAGCCATCAGTTACTAACGCAGAGGATGGCTTTCAGCTAAGCTGCGAATACTGCACCATGAAGTTTGGTAATATAGCTGGTCTATTCCAGCACATGAGAGCCACGCATATGGATCGCCTAAGCAGTCCCAATTCATATTATGAGCACTTTAATCGGTTGGCCACTGCGGGCACTTTTAGTCCACGTTTGGCTTTGGAGCAGCTGCCCAAGATTAAGCAGGACTTGCACAGTCCACAGCCACCGCTAAAAACGCATGCCGAAGAGGAACCCACCGATTTGAGCAGCAATAAAAGACGCAGCGTGGAGTTGGAAACGGCAACAGCAGCGCCTGCAGCTCCAGGCATCTTTTTCTGCAATCAATGCAATGCGGGTTTGCCGGATTTTGAAAGCTTCCGCAATCATTTAAAGTCACATATAGCCGAGGGTCTGCAGCTGGTGTGTCCACATTGCGGCATTACTTTACCCGATCAGCCGGAGTATGAGCGTCATGTGGTAGCCCACTTTTTGATTACCAACTCGGAGTACAACTGTAGCGCCAGCTGTAGCAAATCCTTTGCCAAGGCGGAGGAGCTACAAAAGCATTTACTGGCCGAACATGTGGTGACCATGTTGAAGTGTGCGTTATGCTCGGAGCTCTGTGAATCCCAGATGGCCATGCAGCTGCACTTTGCCTGTACACATACCCAAGAAACCAAGCTGTTGCGCTGCAGCGCCTGCATGGAGCTCTTTCGTAATGAGACGGATTTCCATGTGCACGTCAAGACGCGTCACCAGCTGGCCAATGGCATGCTAGCCGCCGCGTCTGCTTCAGCCAATGTGGCCAATGCGGGCTCAATGCCAGCTAGTCCCTTGCAGTGCATGTTCTGTCGTGTGGTGTGCTCCTCGGAGCTGGAAATGCATTTCCATTTGGCTGCGCATGCTCGTCAATTTCGTTGTCCCTCCTGCCCGGAAACATTTCATGTGGAATTTCTGCTGGATCGTCATATGCAAAGTCAGCATGGCGGCGCCTTGGAGGAGCGCACTACCAGCGATAAGGACAGCTATGAGGAGACAGCATCTGTTACCGTAGCTAATGCCAACACCTTAAGTCCCATGAACAGTCTTTATGTAAATGCTTTGTTTGGTGGCAAGCCGCCCTTGCTGCCTGGCCTCACTGCATCCAGCgccaataccaacaacaacagcagcattatAGACTACAATGTGGCCTTTGCGGCGGCTCAGTTGCAGCACAAGGGTCTTTTTGCGCCGCCGGCGCCTACAGCCAGCTCCAAGTTTTATAGCCCACTTCAAGTGGATACCAGCGCCTTGAAGCCACAGGCTGCAGCGCATCCTGCGCTTATGTATGGTCTAAGTCAGCGTTATTTCGATACTAATCGCGCCTTGATGGAGATGTATGCAGCGCAGCAGAGCAAGGGTTCCAACTACTTTGCGCCCAGTCCCAAGGCAGCGCAGGAAACTGGTGGCAGAGGCTCCAACGAAGTTGCTCCCCCTCCCACCAATAGCTACAGCTGCGGCATGTGCGAACGTCAGGATTTTCGCAGCGAAACGGAGCTGCATTCCCATCGTAAGATTGCGCACAATATGAAAACTGGCGTCAGCTTGCGTTGTGCCTATTGTGCGGGTAATTTCAAATCCCGTAGCGAGCTGGAGCATCATATGAAAACCTGTCACAACTCCACGGGCAAGCACAAGTGTCTGATCTGCGATGAGGTGTTTCCTTCACCTGCCATACTAGCGGAGCACAAGCTGCAGCACTCCAAGGTGGGTCAATCTGGCAAATGTTCGCATTGTGGTCAGCCCTTGCCTGATGTGGCTGCTTTCAAGTCCCATTTGTCTGAGCATGGTCAGAATGCTACAACGAATGGTGGCGGCAGCAGCGCTACGCCACCGGTGCAGTGCATCTGCTGTCGTCAGACTTTACACTCGGACTTTGAGATAAGCTTACATGCCAAGTTTCATACGAAATCGGGCAACAGTCTACAAGAGCCGGTATGCGCGCTCTGCTTAGAGCCATTGGAGTGCTCCtccggcaacaacaacaatggcaataaTGGCGAACCACCGGCTCCCGCCAAGGTGTGCGACAAATGCTGCCGCAAACATAATCTCAATCCAAAACAACGCAAATCCCAGACCGAAACACACTATGAACTACCGCCGCCAAGTGGTGCTGCCGCCGCCAGCTCAAGCTATACAGAAAATCGCTGCAATTTGTGCAAGATGATACTGCCACATGCAGCTAAGCTGCAGGAGCATCTGGTGGAGCATACCTTTGCAGGTACTGAAGAACGCGGATTTAATTGTTATATATGCTCGGCTGTTTTCACTGCGCCCGCTGGTTTGCTTAATCATATGGCGGAGCATGGCCAGAATGCCAAACCTTATGATTGCAACTTGTGCTCGGATAAGTTCTACTTTCGTGCTGAGTTAGATCATCATCAGCGTGAACATGAGCTAAGACCAGCCGCAGCAACACGTGCGCTAACCTTGCCCAAACAAGAGCCACTAACTCAACCGGAAACGCCACCCAGCCGCAATAGTCCTGCTACTGTTAAACAGGAGCTCTACGAAACAGAAAATGAGTGTAGCCCCGCTGCGGAGCCCATACAGGAAGAGGAGGAATACATAGAAGTGGAACAAATGCCGCATGAAACGCGCACAGCCGAGTCTATAGCTAATGCAGAACGTTCCAGCAGTAGCGCCTAA
Protein Sequence: MYSTHTSSSYSPSISDGTLTPNSHLPQTEQDTASAELKTNGEAAAAAAGGDAELLPVAVKAKRPAHLTHHHHHYHHQQALKIANKLRKINKEAKLQAAGSGGVGGAAGAASTGTTSSATKFNKLTGEGIKSRSDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASSNGSLNKRRYVLAMASDSSPSRLEFPKRARATPTPLLRCSNCPKAEFNSLEQLNGHLQSAHEQVQQAKPSVTNAEDGFQLSCEYCTMKFGNIAGLFQHMRATHMDRLSSPNSYYEHFNRLATAGTFSPRLALEQLPKIKQDLHSPQPPLKTHAEEEPTDLSSNKRRSVELETATAAPAAPGIFFCNQCNAGLPDFESFRNHLKSHIAEGLQLVCPHCGITLPDQPEYERHVVAHFLITNSEYNCSASCSKSFAKAEELQKHLLAEHVVTMLKCALCSELCESQMAMQLHFACTHTQETKLLRCSACMELFRNETDFHVHVKTRHQLANGMLAAASASANVANAGSMPASPLQCMFCRVVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGALEERTTSDKDSYEETASVTVANANTLSPMNSLYVNALFGGKPPLLPGLTASSANTNNNSSIIDYNVAFAAAQLQHKGLFAPPAPTASSKFYSPLQVDTSALKPQAAAHPALMYGLSQRYFDTNRALMEMYAAQQSKGSNYFAPSPKAAQETGGRGSNEVAPPPTNSYSCGMCERQDFRSETELHSHRKIAHNMKTGVSLRCAYCAGNFKSRSELEHHMKTCHNSTGKHKCLICDEVFPSPAILAEHKLQHSKVGQSGKCSHCGQPLPDVAAFKSHLSEHGQNATTNGGGSSATPPVQCICCRQTLHSDFEISLHAKFHTKSGNSLQEPVCALCLEPLECSSGNNNNGNNGEPPAPAKVCDKCCRKHNLNPKQRKSQTETHYELPPPSGAAAASSSYTENRCNLCKMILPHAAKLQEHLVEHTFAGTEERGFNCYICSAVFTAPAGLLNHMAEHGQNAKPYDCNLCSDKFYFRAELDHHQREHELRPAAATRALTLPKQEPLTQPETPPSRNSPATVKQELYETENECSPAAEPIQEEEEYIEVEQMPHETRTAESIANAERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337012;
90% Identity: iTF_00339377;
80% Identity: -