Basic Information

Insect: Chymomyza caudatula
Gene Symbol: L
Assembly: GCA_035041775.1
Location: JAWNKW010000034.1:2742440-2751452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1e-05 0.00079 19.8 2.9 1 23 171 193 171 193 0.98

2 18 0.35 27 5.6 6.2 1 23 199 221 199 221 0.97

3 18 1.7e-07 1.3e-05 25.4 3.2 1 23 227 249 227 249 0.99

4 18 1.2e-05 0.00096 19.6 0.4 1 23 255 277 255 277 0.99

5 18 0.12 9.2 7.0 0.1 2 23 342 365 341 365 0.90

6 18 0.0038 0.3 11.7 0.2 2 23 385 407 384 407 0.95

7 18 0.061 4.8 7.9 0.7 1 23 490 512 490 512 0.97

8 18 0.0076 0.59 10.8 0.0 2 23 520 541 519 541 0.91

9 18 0.0054 0.42 11.3 0.2 1 23 549 573 549 573 0.92

10 18 6.4 5e+02 1.6 1.7 2 23 609 631 608 631 0.91

11 18 0.0025 0.2 12.3 1.1 1 23 685 708 685 708 0.97

12 18 0.58 45 4.9 1.2 1 23 878 902 878 902 0.94

13 18 0.0025 0.19 12.3 3.8 2 23 911 933 910 933 0.96

14 18 0.04 3.1 8.5 0.1 1 23 939 961 939 961 0.92

15 18 0.062 4.8 7.9 0.1 2 23 969 990 968 990 0.95

16 18 0.16 12 6.6 0.7 1 23 1106 1128 1106 1128 0.94

17 18 0.01 0.79 10.4 0.0 1 23 1138 1160 1138 1160 0.96

18 18 0.16 12 6.6 1.9 1 23 1167 1189 1167 1189 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1e-05	0.00079	19.8	2.9	1	23	171	193	171	193	0.98
2	18	0.35	27	5.6	6.2	1	23	199	221	199	221	0.97
3	18	1.7e-07	1.3e-05	25.4	3.2	1	23	227	249	227	249	0.99
4	18	1.2e-05	0.00096	19.6	0.4	1	23	255	277	255	277	0.99
5	18	0.12	9.2	7.0	0.1	2	23	342	365	341	365	0.90
6	18	0.0038	0.3	11.7	0.2	2	23	385	407	384	407	0.95
7	18	0.061	4.8	7.9	0.7	1	23	490	512	490	512	0.97
8	18	0.0076	0.59	10.8	0.0	2	23	520	541	519	541	0.91
9	18	0.0054	0.42	11.3	0.2	1	23	549	573	549	573	0.92
10	18	6.4	5e+02	1.6	1.7	2	23	609	631	608	631	0.91
11	18	0.0025	0.2	12.3	1.1	1	23	685	708	685	708	0.97
12	18	0.58	45	4.9	1.2	1	23	878	902	878	902	0.94
13	18	0.0025	0.19	12.3	3.8	2	23	911	933	910	933	0.96
14	18	0.04	3.1	8.5	0.1	1	23	939	961	939	961	0.92
15	18	0.062	4.8	7.9	0.1	2	23	969	990	968	990	0.95
16	18	0.16	12	6.6	0.7	1	23	1106	1128	1106	1128	0.94
17	18	0.01	0.79	10.4	0.0	1	23	1138	1160	1138	1160	0.96
18	18	0.16	12	6.6	1.9	1	23	1167	1189	1167	1189	0.97

Sequence Information

Coding Sequence: ATGATGGCTTTAAAGATGTTATATCGTGGACCCAGTTCGCgtttagaaaatttaattgagaAAATTCAAGCAACCAGAGAAATCACAAATAACGATATGTACTCCACGCACACCTCCTCCAGCTATTCGCCTTCCATATCGGATGGCACGCTAACGCCCAATTCGCTAATGCCACACAATGAGCAGGATCAGGCAAATGCCGAGCTGAAAACCAATGGCGaagctgcggctgctgctgctggcggaGATGCAGAGGTGTTGCCAGTGGCTGTCAAGGCCAAACGACCCACACATTTaacacatcatcatcatcattatcatcatcagcagGCGCTAAAAATTGCCAACAAGTTGCGCAAAATCAATAAGGAAGCCAAGCTACAAGCAGCGGCGTCTGCCAGTGGAGGCGCTGGAGGAGCTGCTGGAGCAGCTTCAACTGGCACGACCAGCAGTGCGACAAAGTTTAATAAGTTGACAGGCGAGGGCATTAAAAGCAGAAGCGACGGTTCCTATCAGTGTCAGTTTTGTGATAAATCATTTCCGCGACTCGGCTACTTGAAACATCACGTGCAGAGCCATGCCGAACATCTGCCGTTTAAATGCGAATACTGCGCCAAGTTGTTCAAGCACAAGCGCTCACGTGATCGCCATAAgaaattgcatacaaatgaGAGGAACTACAAGTGTCCACATTGTGAGGCAGCATTCTCGCGAAGCGATCATCTGAAGATTCACATGAAAACGCATGATATTCAGAAGCCCTTCCAGTGCAGCATGTGCAATCGTGGCTACAACACCGCCGCTGCGCTCACCTCTCACATGCAGAAGCACAAGAAGAATGCAGCCATATTGGCTGCCGGCGGCAATCCCAATGCGCTCAACTACAGTCCACGTTCCACTGGCTCCGCCTCAAGCAATGGCAGCCTAAACAAACGACGCTATGCACTAGCCATGGCTTCCGACAGCAGTCCCAGTCGCATGGAATTTCCCAAACGTGCgcgtgccacgcccacaccaCTGCTGCGCTGCAGCTATTGTCCCAAAGCGGAGTTTAGCAGTCTGGAGCAGCTGAACGGACATCTGCAGAGCGCGCACGATCAGGTGCAGCAGACTAAGACCGCAGTTACGTCTGCCGAGGATGGCTTTCAGCTGAGCTGTGAATACTGCACCATGAAGTTTGGCAACATAGCTGGTCTATTCCAGCACATGAGAGCCACGCATATGGATCGACTGAGCAGTCCGAATTCCTACTATGAGCACTTCAATCGTTTGGCCACTGCGGGCACGTTTAGTCCACGTTTGGCTTTGGAGCAGCTGCCTAAGATAAAGCCAGATTTGCACAGCCCACAGGCGCCGCTTAAAATTCACTCGGAAGAGGAACCCACCGATctgagcagcaacaaaagacGCAGCGTGGAGTTGGAAtctgcagcagcaacggcTGCTCCAGTTGCGCCACCGGGCATCTTCTTCTGCAATCAATGCAATGCGGGACTGCCGGATTTTGAGAGCTTTCGCAATCATTTAAAGTCGCACATAGCCGAGGGCCTGCAGCTAGTGTGTCCACACTGCGGCATTACATTGCCCGACCAGCCGGAGTATGAGCGTCATGTGGTTGCCCACTTTTTGATAACCAACTCAGAGTTTAACTGCAGCGCCAGCTGCACCAAATCCTATGCCAAGGCGGAGGAGCTACAAAAGCATTTGCTGGCCGAGCATGTGGTGACCATGCTCAAGTGCGCCCTCTGCTCGGAGCTCTGTGAATCCCAGGTGGCCATGCAGCTGCACTTTGCCTGTGCTCACACCCAAGAAACTAAACTGCTGCGCTGCAGCGCATGCATGGAGCTGTTTCGCAATGAGACGGATTTCCATGTGCATGTGAAGACGCGTCATCAGCTGGCCAATGGCATGCTAACCACAGCCCCCGCTGCTTCTGCCAATGCCGCCAATGCCGGCTCGCTGCCAGCTAGTCCCTTGCAGTGTATGTTCTGTCGCGTGGTTTGTTCCTCGGAGCTGGAAATGCATTTCCATTTGGCTGCACATGCGCGTCAATTCCGCTGTCCCTCCTGCCCGGAAACATTTCATGTGGAATTTCTTCTGGATCGTCATATGCAAAGTCAGCATGGTGGCGCCTTGGATGAGCGCACAGCAAGCGATAAGGATAGCTATGAGGAGGCAGTAGCTGTGACCGtagccaatgccaatgccttGAGTCCCATGAATAGCCTCTATGTGAATGCCTTGTTTGGTGGCAAGCCACCGTTGCTGACAGGCCTCAGTACGTCCAGCGCCAatactaacaacaacagcagcatcatAGATTACAATGTAGCCTTTGCGGCGGCTCAGTTGCAGCACAAGGGCCTCTTTGCGTCACCGGCACCCAGCGCCAGCTCCAAGTTTTATAGTCCGCTGCAAGTGGACACCAGCGCCATGAAGCCACAGGCCGCCGCACATCCTGCTCTCATGTATGGTCTAAGTCAGCGTTATTTCGATACCAATCGAGCTTTGATGGAGATGTATGCGGCGCAGCAGAACAAGAGCTCCAACTACTTTGCGCCCAGTCCTAAGGCGTCGCAAGAAACGTCTGGTAGAGGCTCCACAGAAGTGGCTAGCGCCGCCGGCAGCAGCTACAGCTGCGGCATGTGCGAGCGACAGGATTTTCGCAGCGAAACGGAGCTGCATTCCCATCGCAAGATTGCTCACAACATGAAGACTGGCGTCAGTTTGCGTTGCGCCTATTGTGCGGGCAACTTTAAGTCCCGTAGCGAGCTGGAACATCATATGAAAACCTGCCACAACTCCACGGGCAAACACAAGTGTCTCATCTGTGACGAGGTGTTTCCTTCACCCGCCATATTAGCGGAACACAAGCTACAGCACTCCAAGGTGGGTCAATCCGGCAAGTGTTCGCATTGTGGTCAGCCTTTGCCTGATGTGGCTGCTTTCAAGTCGCATCTAGCCGAACATGGTCAGAATACGGCTGTCAATGGTGGCGGCACAGGCGCAAGTCCGCCCGTGCAGTGTATCTGCTGTCGTCAAACTTTGCACTCTGAATTTGAGATCAGCTTGCATGCCAAGTTCCATACTAAGTCGGGCAGCAGTCTGCAGGAACCGGTATGCGCGCTTTGCCTGGAACCTCTGGAGTGTatcaacaatagcaacaatgtGGAGCAGCCTGCTCCTGCCAAGGTCTGCGATAAATGCTGTCGCAAACATAATCTTAATCCGAAGCAACGCAAGTCACAAGCCGAAACACACTATGAGCTGCCGCCTCCAAACGCGGCTTCCGCAGCCAGCTCAAGCTACTCGGAACACCGCTGTAATCTGTGTAAAATGATTTTGCCTCATGCGGCCAAGCTGCAGGAGCATCTGGTAGAGCACACCTTTGCGGGCACAGAGGAACGTGGTTTTAATTGTTATATATGCTCTGCTGTGTTCACTGCGCCCGCTGGACTGCTCAATCACATGGCGGAGCATGGCCAGAATGCCAAACCTTATGATTGCAATCTATGCTCGGATAAATTCTACTTTCGCGCCGAACTGGATCATCATCAGCGTGCGCATGAATTGAGGCCAGCCGCCACTACACGTGCGCTAAACTTGCCCAAACAGGAGCCACTAGCGCCACCGGACACGCCACCCAGCGGCAATAGTCCGACTACTGTAAAACAGGAGCTCTACGAAACAGAAAACGAGTGTAGTCCAGCTGCTGGACCCACACAGGAAGAGGAGGAGTACATAGAGGTAGAGCGAATGCCGCATGAAACACGCACAGCCGAGTCTATAGGTAATACCGAGCGTTCTAGTAGTAGCGCCTAA
Protein Sequence: MMALKMLYRGPSSRLENLIEKIQATREITNNDMYSTHTSSSYSPSISDGTLTPNSLMPHNEQDQANAELKTNGEAAAAAAGGDAEVLPVAVKAKRPTHLTHHHHHYHHQQALKIANKLRKINKEAKLQAAASASGGAGGAAGAASTGTTSSATKFNKLTGEGIKSRSDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASSNGSLNKRRYALAMASDSSPSRMEFPKRARATPTPLLRCSYCPKAEFSSLEQLNGHLQSAHDQVQQTKTAVTSAEDGFQLSCEYCTMKFGNIAGLFQHMRATHMDRLSSPNSYYEHFNRLATAGTFSPRLALEQLPKIKPDLHSPQAPLKIHSEEEPTDLSSNKRRSVELESAAATAAPVAPPGIFFCNQCNAGLPDFESFRNHLKSHIAEGLQLVCPHCGITLPDQPEYERHVVAHFLITNSEFNCSASCTKSYAKAEELQKHLLAEHVVTMLKCALCSELCESQVAMQLHFACAHTQETKLLRCSACMELFRNETDFHVHVKTRHQLANGMLTTAPAASANAANAGSLPASPLQCMFCRVVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGALDERTASDKDSYEEAVAVTVANANALSPMNSLYVNALFGGKPPLLTGLSTSSANTNNNSSIIDYNVAFAAAQLQHKGLFASPAPSASSKFYSPLQVDTSAMKPQAAAHPALMYGLSQRYFDTNRALMEMYAAQQNKSSNYFAPSPKASQETSGRGSTEVASAAGSSYSCGMCERQDFRSETELHSHRKIAHNMKTGVSLRCAYCAGNFKSRSELEHHMKTCHNSTGKHKCLICDEVFPSPAILAEHKLQHSKVGQSGKCSHCGQPLPDVAAFKSHLAEHGQNTAVNGGGTGASPPVQCICCRQTLHSEFEISLHAKFHTKSGSSLQEPVCALCLEPLECINNSNNVEQPAPAKVCDKCCRKHNLNPKQRKSQAETHYELPPPNAASAASSSYSEHRCNLCKMILPHAAKLQEHLVEHTFAGTEERGFNCYICSAVFTAPAGLLNHMAEHGQNAKPYDCNLCSDKFYFRAELDHHQRAHELRPAATTRALNLPKQEPLAPPDTPPSGNSPTTVKQELYETENECSPAAGPTQEEEEYIEVERMPHETRTAESIGNTERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00336199; iTF_00339377; iTF_00337812; iTF_00338639;
90% Identity: iTF_00336199;
80% Identity: -