Cpro009365.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- -
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000023.1:13146532-13155486[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 1.8e-08 33.9 0.0 1 40 581 621 581 624 0.90 2 4 6.8e-14 1e-10 41.2 0.1 2 39 636 673 635 676 0.94 3 4 1.6e-17 2.4e-14 52.8 0.0 1 45 690 735 690 735 0.98 4 4 3.3e-20 4.9e-17 61.4 0.0 1 45 742 787 742 787 0.97
Sequence Information
- Coding Sequence
- ATGTACTTGCTTCTGAAGCATTTGAGGCATTTTGACACGGATTGCAATGAGTCTGTCAATTCCTCTTACGTTTGGAACGGTCTGCTACGTACCGCCGAACAGTTGAAAATCAAAGGTCTCTGTGAGACAGCCGAAAATGCGGATGATTTGAATGACGCAGCCACCGCAACAATAACCTTATCCGAGAATATACAGCAAGCAGTTGTTGGTAACATAGTTAATACCACCATAGTGCCAGGTGCGCCCTCACCCACGCccgaacaacaacagcaacaccaacagcagcagcagcagcagcaacaacagcaggtgcacttgcaacaacagcaacaacacttGGTAAATGCTGCACTCTTGCAGCATACGAATCTTGTTGGTAACAGTGGTGCACAGCTGGCAAACGCTGGACAAATTTTAAGCAGTaatacagcagcagcaagtggcaacaatagcaacagcagcagcaatctaCAGGGAGTACAAGCAACTGGAGCGGCAGCACCAGCTGGcacacaacaactacagcaacagcagcagcagcagcaagtggcACGCAAATCACGTCAACGAAAACGCTCCAAATCACCGGATCTAAGCCAAGCCTCACAGTCGTCACAGTCTGGAGCAGCACATCATCACCAGTCGCAGACCATACTCATACAGGGTCAAAATCAAACGTCCATTGTAAGTCTGCATCAGACCGCAGACGGCAATTATATACCCGTAGCAGCGTCGGGTGAGGATTCTGATAGTGAAAAGCCGGCAAAGGTCTGCAAGACAGAGACATCGGTTGCCTCGCCGCAATCCAATTCATCGACCTCAAATAATGCTGCTGGCGTGACCGGCGTGACAGCATCGGGTCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgacTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTAGGCGTGCCCATGGGATTTTTGGATTTCACACCCGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATCTATCCTGCAATCCCAGCACGGATACGCGTGATCTATCAAACCCCACCGAACCGCTGGACATAGACAATCATTTGGCGCAACAAATACATAGGCTTGATCAATCACCCATGCACTCGATATCGCATCATCATACTGGTGACGAGAGCAATTCGAATCTCGTGCATATAAAAAGCGAAGTTATTGAGGCCAAGCAGCTGGCTGCACAGCATCATGCGCATGTGCAGGCACAGCAACATGCACATCATCATCAGGCGCAGCAACATCATATGCATACACAACAATTGATGGCACAGAGCcaggcgcagcagcagcatcatcagcagcagcagcaacagcagcagcaacaacagcaggcaGCGGTGCATGCACAGCATGCAGCACATGCCACACATGCTGAGATTAATGCTGGCACTGTCATGGAGATTGATCCGAGCCAAATCAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCTCAGGACATATGGATATGTACAATTCCGATACCAGCGAGGATTCAATGATGATCGCCAATGGTTCGCCGCATGATCAAAATGAACCGCATTATACGAATTTGGATCAACAGCACGGCGGTCTTGGCAGCAGCGGTGGCCCTGGTGCCGGCGCTGGggctggtgctggtggtggtggtagcGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCCTCAACCACTCTCTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCAAAGAAGGAGGGCGGCACTAAATCATGGAATGAAGATGCATTACAGAATGCCTTGGAAGCACTACGCTCTGGACAGATATCGGCTAATAAAGCGTCAAAAGCCTTTGGTATACCATCATCGACGCTGTATAAGATTGCACGTCGTGAGGGTATACGTTTGGCAGCGCCATTCAATGCCGCTCCAACCACATGGACACCTGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGTAATACATCTGTACAAAAAGCTAGTGCTGAATTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATTGAACTGTCGCGTTCGAATCCAACACCATGGTCGGAGGATGCCATGAATGAAGCATTGAATTCAGTGCGCGTCGGCCAAATGTCCATCAATCAGGCGGCTATACATTACAACCTGCCCTACAGCTCGCTTTATGGACGCTTCAAGCGTGGCAAATACGATGTCAGCAATATCAGCGGAGTATCTCTGAATAACACATCGGGCAACACAACCGGCAGCATTGAAATTATTGAGCATAGTCAGGAGAACTCGttgcaTATGTTGCAGCAACAGTTCCCGTACAGCCCATCGCCGCATCCAACACCGCAACATCACAGCACGCCGCAGGGACCGCCAACGCCACAACATATGCAGCAACATGTGGTGCATATGCAACAACAATCGCCGCATCAATCGCATGGACATCAGCAacatatgcagcagcagcaacaggatGTAGTTACATCCAGCAGCCAGGTGGTGCACGctagccagcagcagcagcagcagcagcaacagcagcagcagcttcagcAGATCTATCAGCATCATGGCACGCCGGAGCGTAGTTGA
- Protein Sequence
- MYLLLKHLRHFDTDCNESVNSSYVWNGLLRTAEQLKIKGLCETAENADDLNDAATATITLSENIQQAVVGNIVNTTIVPGAPSPTPEQQQQHQQQQQQQQQQQVHLQQQQQHLVNAALLQHTNLVGNSGAQLANAGQILSSNTAAASGNNSNSSSNLQGVQATGAAAPAGTQQLQQQQQQQQVARKSRQRKRSKSPDLSQASQSSQSGAAHHHQSQTILIQGQNQTSIVSLHQTADGNYIPVAASGEDSDSEKPAKVCKTETSVASPQSNSSTSNNAAGVTGVTASGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVHIKSEVIEAKQLAAQHHAHVQAQQHAHHHQAQQHHMHTQQLMAQSQAQQQHHQQQQQQQQQQQQAAVHAQHAAHATHAEINAGTVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGSSGGPGAGAGAGAGGGGSEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNISGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPTPQHHSTPQGPPTPQHMQQHVVHMQQQSPHQSHGHQQHMQQQQQDVVTSSSQVVHASQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336648; iTF_00335797; iTF_01319672; iTF_01319845;
- 90% Identity
- iTF_00335797;
- 80% Identity
- -