Ccau002474.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000040.1:322737-328222[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 1.9e-08 34.0 0.0 1 40 555 595 555 598 0.90 2 4 6.1e-14 1.1e-10 41.2 0.1 2 39 610 647 609 650 0.94 3 4 1.4e-17 2.5e-14 52.8 0.0 1 45 664 709 664 709 0.98 4 4 2.9e-20 5.1e-17 61.4 0.0 1 45 716 761 716 761 0.97
Sequence Information
- Coding Sequence
- ATGCTGCTCAGACCAGCTGAGTAtGGTCTGCTACGTACCGCCGAACAGTTGAAAATCAAAGGTCTCTGTGAGACAGCCGAGAATGCGGATGATTTAAATGACGCAGCCACCGCTACCATAACCGTTTCCGAGAATATACAGCAAGCGGTAGTTGGTAATATAGTTAACGCCACCATAGTGCCAGGCGCGCCTTCACCCACGcccgaacaacaacaagaacatcaacagcagcaacaacaacagcaacaacaacagcagcagcagcagcagcagttgcatgtgcaacagcagcaacaacaacaactggtcAACGCTGCGCTTCTATCACACCAAGGCCTAGTCGGGAATAGTGCCGCACAATTGGCAAACGCGGCCGGTCAACTGCTTAGCAATACAGCGAGTGGcagcaacggcagcaacaaTCTACAGGGACAGCCAGGTGTCgccacacagcagcagcaagtgaCACGCAAGTCGCGTCAACGCAAACGATCCAAATCGCCAGATTTGCAGCTGCAAAGCAGTAGCCAAGCCTCACAATCTTCTGCAGCATCACAGCATCATACGCATCATCCGCAGACCATATTGATACAAAGTCAGAATCAAACGTCCATTGTTAGTCTGCAGCAGACCGCAGACGGAAATTATATACCAGTTTCAGCGGCGGAAGATTCAGATAGTGAAAAGCCGACAAAGATCTGCAAGACAGAGACATCGGTTGCATCGCCGGCATCAAATTCATCGACCTCAAATAATGCTGCTGGCGTGACCGGCGTGACAGCATCGGGTCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGACGgaaaagataaaaatatgACTAGTTTAGGCATGGGCATGAATGGCGGCCTATTAGGCGTACCCATGGGATTTTTGGATTTTACCCCCGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATCTGTCCTGCAATCCCAGCACGGACACGCGTGATCTATCAAATCCCACCGAACCGCTCGATATAGACAATCATTTGGCGCAGCAAATCCATAGGCTTGATCAATCACCCATGCACTCGATATCGCATCATCACACAGGCGACGAGAGCAATTCGAATCTCGTGCAGCACATTAAAAGCGAAGTTATTGAAGCCAAGCATCTGGTTGCACAGCAGCATCATGCGCATGCCCAGGCCCAACAGCATGCACATCATCATCAGGCGCAGCAACATCATTTACATACGCAGCAAATGCTGGCCCAGAGCcaggcacagcagcagcatcatcagcagcaacaacagcaggcaGCGGTGCATGCACAGCATGCGTCGCATGCCACACATGCTGAAATAAATGCTGCCACCGTCATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGTATGATTATAACGCCAGAGATTGTCAACATGATGTCCGCAGGAGGGCATATGGACATGTACAACTCCGATACGAGCGAGGATTCAATGATGATCGCAAACGGTTCACCGCACGATCAGAATGAGCCGCATTATACGAATTTGGATCAACAACACGGCGGCCTAGGCAGCAGCGGTGGCCCTGGTGCCGGCGCTGGGGCTGgtgctggtggtggtggtggtagCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCAACGACTCTATGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCAAAGAAGGAGGGCGGCACCAAATCATGGAATGAAGATGCATTACAAAATGCCTTGGAAGCACTACGCTCTGGTCAGATATCGGCTAATAAAGCGTCTAAAGCCTTTGGTATACCATCATCGACATTGTATAAGATAGCACGTCGTGAGGGTATACGTTTGGCTGCGCCATTCAATGCCGCCCCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGTAATACATCTGTACAAAAAGCGAGTGCTGAGTTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAACGTGAGGGCATTGAACTGTCGCGTTCAAATCCAACACCATGGTCCGAAGATGCAATGAATGAGGCATTGAATTCAGTGCGTGTCGGTCAAATGTCCATTAATCAGGCGGCTATACACTACAACCTGCCCTACAGCTCGCTTTATGGGCGCTTTAAGCGCGGCAAATACGATGTGAGCAATATCAGTGGAGTAACTCTGAATAATACAACGGGCAATACAACCGGCAGCATTGAAATTATCGAGCATAGTCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCAACGCCGCAACATCACAGCACGCCGCATGGGACGCCAACGCCTCAGCATATGCAACAGCATGTCGtgcacatgcaacaacaatcgCCGCATCAATCGCATGGACATCAGCAACacatgcagcagcaacaggatGTGGTCACATCCAGCAGCCAGGTGGTGCACGGTAGCCaacagcaccagcagcagcaacaacagcaacaacagcaacaacagcagcagcagcagcaacagcaacaacagcagcagcagcttcagcAGATTTATCAGCACCATGGCACGCCTGAGCGTAGTTGA
- Protein Sequence
- MLLRPAEYGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATIVPGAPSPTPEQQQEHQQQQQQQQQQQQQQQQQLHVQQQQQQQLVNAALLSHQGLVGNSAAQLANAAGQLLSNTASGSNGSNNLQGQPGVATQQQQVTRKSRQRKRSKSPDLQLQSSSQASQSSAASQHHTHHPQTILIQSQNQTSIVSLQQTADGNYIPVSAAEDSDSEKPTKICKTETSVASPASNSSTSNNAAGVTGVTASGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLVAQQHHAHAQAQQHAHHHQAQQHHLHTQQMLAQSQAQQQHHQQQQQQAAVHAQHASHATHAEINAATVMEIDPSQIKHEPGMIITPEIVNMMSAGGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGSSGGPGAGAGAGAGGGGGSEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNISGVTLNNTTGNTTGSIEIIEHSQENSLHMLQQQFPYSPTPQHHSTPHGTPTPQHMQQHVVHMQQQSPHQSHGHQQHMQQQQDVVTSSSQVVHGSQQHQQQQQQQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339063;
- 90% Identity
- -
- 80% Identity
- -