Sleb007150.1
Basic Information
- Gene Symbol
- lolal
- Assembly
- GCA_003285725.2
- Location
- NW:6082460-6138526[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.6e-12 1.4e-08 33.8 0.0 1 40 625 665 625 668 0.90 2 4 4.2e-14 7.9e-11 41.1 0.1 2 39 680 717 679 720 0.94 3 4 9.7e-18 1.8e-14 52.7 0.0 1 45 734 779 734 779 0.98 4 4 2e-20 3.8e-17 61.3 0.0 1 45 786 831 786 831 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCCGTTCGTGGTCATCAGTACTTCAGCTTGCGTTGGAATAACTACCAGAACACGATGACCTCTGTTTTTCAGCAGCTGCGCGAGGATCTGTCCTTCGTCGATGTGACCTTGTCTTGCGAGCATGGCTCCCTCAAGGCCCACAAGGTTGTCCTCTCTGCGTGCTcgacatattttcaaaaactgcTGCTTGAGAATCCATGCAAACACCCGACCATCATACTACCCGCCGATATCATATTCACagatttgaaaacaattattgACTTTGTTTATCGCGGCGAGATCGATGTCACAGAATCGGAGCTACAGGGACTGCTGCGCACCGCCGAacagttgaaaattaaagGTCTCTGTGAGACAGCTGAGAATGCGGATGATTTGAATGACGCAGCCACTGCGACTATAACCGTATCAGAGAATATTCAGCAAACGGTTGTTGGTAATATTGTAAATACAACAATAGTACCGGGAGCGCCCTCACCCACAActgagcagcaacaacagttacacgtgcagcagcaacagcaacaacaacaacaattgaccAACGCTGCGCTTCTATCACAACAGCACCTTGGAAGTAATCAAGCGTCGGGCCAACTCCTGAGTACAGCGGCCGGCACAAGTCTGCAggcacaacagcagcagacgCAAACGCAGCCAACGTCGCAGCAAGGTGTCCGAAAATCGCGTCTACGCAAGCGCTCCAAATCCCCCGATCTACAGCTGCAGGGCGGTGCAACACAACCACAGCCGGCGCATCACCATCATCCGCAAACTATACTCATACAGGGACAGAATCAAACGTCAATTGTTAGCCTGCAACAGACAGCTGACGGAAACTATATACCCGTCTCTTCTGGCGTAGGACAGGGTGAAGAGGAATCCGATTGCGATAAGCCGACAAAGATCTGCAAGACAGAAACTTCGGTCGCCTCGCCGGCATCCAACTCGTCCACATCGAATAATGCTGGTGGCGTGACTGGCGTGACAGCATCGGGCCAAGCTATTGTGACACAAATTGTAGTAGCGCGCGACggaaaagataaaaatatGACTAGTTTAGGCATGGGCATGAATGGCGGCCTGTTGGGCGTGCCTATGGGCTTTCTAGACTTCACACCCGAACCACCAGCACCATCGGCCACACCAGTTAACGTAACGGAACACGTCGATCTCTCCTGCAATCCAAGCACGGACACTCGTGATCTATCAAACCCCACCGAACCCCTGGATATCGACAATCACTTGGCTCAACACATTCACCGGCTCGATCAATCTCCTATGCATTCAATGGCGCATCACCACACCGGCGATGAAAGTAACTCGAATCTCGTGCAGCACATCAAGAGCGAGGTAATCGAAGCTAAGCATTTGGCCGCTGCTCAGCAACATGCGCATGCCCAAGCGCAGGCGCAGCATGCGCACCACCAGGCGCAGCAGGTACACCAAATGCACGCTCAGCAGCTGCTTGCGCAGAGTCaggcacagcagcaacagcagcagcaacaccaccaGCCACAATCCTCGGTGCACTCACAGCATGCACAACATGCTTCGCATGCCGAAATATCGGGCGGCACTGTTATGGAGATTGATCCGAGCCAAATTAAGCACGAGCCAGGCATGATTATAACGCCAGAGATTGTCAACATGATGTCCACAGCGCATATGGACATGTATAACTCCGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAAAATGAGCCGCATTATACTAATTTGGATCAGCAACACGTCGGCTTAGGCAGCAGCGGTGGTGCTGGTGccggtgctggtggtggtggtggtagtGACAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCATCAACCACTCTATGGCAACGAGCTCATCGTTTGGGCATCGAAACGCCAAAGAAGGAAGGTGGCACCAAATCTTGGAATGAAGATGCATTACAAAATGCATTGGAAGCACTACGCTCTGGTCAGATATCGGCAAATAAAGCGTCAAAAGCCTTTGGTATCCCATCATCGACATTGTATAAGATTGCTCGTCGTGAAGGCATACGTCTGGCTGCGCCGTTCAATGCCGCTCCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGTAATACGTCTGTACAAAAAGCTAGTGCTGAATTCGGTATACCGACAGGAACACTTTATGGACGCTGCAAACGTGAGGGCATCGAATTGTCACGTTCGAATCCAACTCCTTGGTCTGAAGATGCCATGAACGAGGCATTGAATTCAGTGCGTGTTGGCCAAATGTCTATCAATCAAGCGGCTATACACTACAACCTGCCTTACAGCTCGCTTTATGGGCGCTTCAAGCGCGGCAAATACGATGTGTCGAACCCTAGTGGCGTATCGCTGAATAACACATCGGGCAACACAACTGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGtTGCATATGTTGCAGCAACAGTTTCCGTACAGTCCTTCGCCGCATCCACCGACACCTCAACATCACGGCACGCCTCAAGCGGCGTCAACGCCACAACACATGCAGCAACATGTTGTGCATATGCAACAGTCGCCGCATCCGCATGCCCATCAGCAACATattcaacaacagcaacaggatgTGGTCACATCAAGCAGCCAGGTGCATGCtagccaacagcaacaacaacaacaacagcagcagcagcagcaacaacaacaacttcaacagATCTATCAGCACCATGGAACGCCGGAGCGAAGTTGA
- Protein Sequence
- MAAVRGHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQTVVGNIVNTTIVPGAPSPTTEQQQQLHVQQQQQQQQQLTNAALLSQQHLGSNQASGQLLSTAAGTSLQAQQQQTQTQPTSQQGVRKSRLRKRSKSPDLQLQGGATQPQPAHHHHPQTILIQGQNQTSIVSLQQTADGNYIPVSSGVGQGEEESDCDKPTKICKTETSVASPASNSSTSNNAGGVTGVTASGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVNVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHIHRLDQSPMHSMAHHHTGDESNSNLVQHIKSEVIEAKHLAAAQQHAHAQAQAQHAHHQAQQVHQMHAQQLLAQSQAQQQQQQQHHQPQSSVHSQHAQHASHAEISGGTVMEIDPSQIKHEPGMIITPEIVNMMSTAHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHVGLGSSGGAGAGAGGGGGSDKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNPSGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHGTPQAASTPQHMQQHVVHMQQSPHPHAHQQHIQQQQQDVVTSSSQVHASQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339063;
- 90% Identity
- iTF_01319845;
- 80% Identity
- iTF_01319845;