Camo000679.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- -
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010000174.1:204157-211534[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 2.6e-08 33.9 0.0 1 40 610 650 610 653 0.90 2 4 5.9e-14 1.4e-10 41.1 0.1 2 39 665 702 664 705 0.94 3 4 1.4e-17 3.4e-14 52.7 0.0 1 45 719 764 719 764 0.98 4 4 2.8e-20 7e-17 61.3 0.0 1 45 771 816 771 816 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTCCAATTGCTACGAAGGCTGCCTGCCAACTGcatgactgctgctgctgctggtggttCTGGTACTGCTTGGTCACCCTGTGGTTTCTTTACTCCAAAAGCAGAGAGTGGTCTGCTACGTACCGCCGAACAGTTGAAAATCAAAGGTCTCTGTGAGACAGCCGAGAATGCGGACGACTTGAATGACGCAGCCACAGCAACTATAACGTTATCAGAGAATATACAGCAGGCGGTTGTTGGTAATATAGTTAACGCTACCATAGTGCCAGGTGCGCCCTCACCCACgcccgaacaacaacaacaacagcagcagcagcagcagcaacagcagcaacaacaacaacagcagcaggtgcacttgcaacaacaacagcagcagcagcaacaacagcaacaacatctgGTAAACGCTGCGCTGCTAGCGCATCCCAATCTCGTTGGTAACAGTGGCGGCGCACAATTGTCCAACACTGGCCAACTTTTAAGCAGTCAAACAGCAGccagtggcagcaacagcagcagcagcagtaatcTACAGGGAATAGCAGGAGCAGGTGTCGGAGCAGCAGCAGGTGCcacacaacagcagcagcagcaagtggCACGCAAATCACGTCAACGTAAACGCTCCAAATCGCCAGATTTGCAGCTGCAAAGCACCAGCCAAGCCTCACAGTCGTCACAGTCGGGAGGAGCAACACATCATACGCATCACCAGCCGCACCAGACCATACTGATACAAAGTCAAAATCAAACGTCCATAGTGAGTCTGCATCAGACAGCAGACGGGAATTATATACCAGTAACAGCGGGTGAGGATTCAGATAGTGAGAAGCCGACAAAGATCTGCAAGACAGAGCAATCGGTTGCATCGCCGCAATCCAATTCATCGACCTCAAATAATGCTGCTGGCGTGACCGGCGTGACAGCATCGGGTCAAGCGATTGTGACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgacTAGTTTAGGCATGGGCATGAACGGCGGCCTATTAGGCGTGCCCATGGGATTTTTGGATTTCACACCCGAACCACCAGCACCATCGGCCACACCAGTCACCGTAACGGAACACGTCGATTTATCCTGCAATCCAAGCACGGATACGCGTGATCTATCAAACCCCACCGAACCGCTGGACATAGACAATCATTTGGCGCAACAAATTCATCGGCTCGATCAATCACCCATGCACTCGATATCGCATCATCACACTGGCGACGAGAGCAATTCGAATCTCGTGCAGCACATAAAAAGCGAAGTTATTGAGGCCAAGCAGCTGGCTGCACAGCATCATGCGCATGTCCAAGCACAGCAACATGCGCATCATCATCAGGCGCAGCAACATCATTTGCATACGCAACAACTGATTGCCCAAAATCAggcacagcagcagcatcatcagcagcaacagcagcagcagcagcaacaacagcaggcaGCGGTGCATGCACAGCATGCAACACATGCCACACATGCTGAGATTAATGCTGCCACTGTCATGGAGATTGATCCGAGCCAAATAAAGCATGAGCCGGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCTCCGGACATATGGATATGTACAACTCCGATACCAGCGAGGACTCAATGATGATCGCCAATGGTTCACCGCATGATCAAAATGAACCGCATTATACAAATTTGGATCAACAGCATGGCGGTCTTGGCAGCAGCGGTGGCCCTGGTGCCGGCGCTGGGGCTGgtgctggtggtggtggtgtGGACATTAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCCTCAACCACTCTCTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCAAAGAAGGAGGGCGGCACTAAATCATGGAATGAAGATGCATTACAGAATGCCTTGGAAGCACTACGCTCTGGACAGATATCGGCAAATAAAGCGTCTAAAGCCTTTGGTATACCATCATCGACATTGTATAAGATTGCACGTCGTGAGGGTATACGTTTGGCGGCGCCATTCAATGCCGCTCCAACCACGTGGACACCCGAGGATTTGGAGCGTGCATTGGAGGCGATACGCGCCGGTAATACATCTGTACAAAAAGCTAGTGCTGAATTTGGCATACCAACAGGAACACTTTATGGACGCTGCAAACGGGAGGGCATTGAACTGTCGCGTTCGAATCCAACACCATGGTCGGAAGATGCCATGAATGAAGCATTAAATTCAGTGCGTGTCGGCCAAATGTCCATCAATCAGGCGGCTATACATTACAACCTGCCCTACAGCTCGCTTTATGGACGCTTCAAGCGTGGCAAATACGATGTCAGCAACATCAGCGGAGTATCTCTGAATAATACATCGGGCAATACAACCGGCAGCATTGAAATTATTGAGCATAGTCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCCTCGCCGCATCCAACGCCGCAACATCACAGCACGCCGCAAGGGCCGCCAACTCCTCAGCATATGCAGCAACATGTCGTGCACATGCAACAACAATCGCCGCATCAATCGCATGGTCATCAGCAGCatatgcagcagcaacaacaggaTGTGGTAACATCCAGCAGCCAGGTGGTGCATCCaagccaacagcagcagcagcaacaacaacaacagcagcaacaacagcagcagcagcagcttcagcaGATCTATCAGCATCATGGCACGCCGGAGCGTAGTTGA
- Protein Sequence
- MSVQLLRRLPANCMTAAAAGGSGTAWSPCGFFTPKAESGLLRTAEQLKIKGLCETAENADDLNDAATATITLSENIQQAVVGNIVNATIVPGAPSPTPEQQQQQQQQQQQQQQQQQQQQVHLQQQQQQQQQQQQHLVNAALLAHPNLVGNSGGAQLSNTGQLLSSQTAASGSNSSSSSNLQGIAGAGVGAAAGATQQQQQQVARKSRQRKRSKSPDLQLQSTSQASQSSQSGGATHHTHHQPHQTILIQSQNQTSIVSLHQTADGNYIPVTAGEDSDSEKPTKICKTEQSVASPQSNSSTSNNAAGVTGVTASGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKQLAAQHHAHVQAQQHAHHHQAQQHHLHTQQLIAQNQAQQQHHQQQQQQQQQQQQAAVHAQHATHATHAEINAATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGSSGGPGAGAGAGAGGGGVDIKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNISGVSLNNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPTPQHHSTPQGPPTPQHMQQHVVHMQQQSPHQSHGHQQHMQQQQQDVVTSSSQVVHPSQQQQQQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339063;
- 90% Identity
- iTF_00339063;
- 80% Identity
- -