Ccos008095.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza costata
Gene Symbol
ftz-f1
Assembly
GCA_018150985.1
Location
JAECWU010000001.1:1201174-1221490[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 9.2e-20 8.6e-16 58.4 0.7 1 80 180 258 180 279 0.75
2 2 2.5e-69 2.3e-65 221.7 1.8 150 408 370 622 351 624 0.91

Sequence Information

Coding Sequence
ATGTTATTCAAAATGGAGCCACAACAAGCGACATATATATTTCCGACAGGCTACCAGGATACCACTTCCTCGCATTCACAGCAAAGCGGTGGTGGCGGCGGCAGTGGCTCCGTAGCCGGTGGCAGCACTGGCAATGTAGCACTACTAAACGGCAGCTCTGGTAATGCTGGCGGTGGCTCTGGTTATATGCTATTGCCGCCTGCCAGCAGCTCAAGCGGTCATATATCCGGTAGTGTTGGCGGTGCTGGTGGTGGTGGCCATGGTGGCACCAGTGCCACCTCCGGTGTCAGCGGTGAAGCCATTGATTTTAAGCATCTCTTTGAGGAGCTCTGTCCCGTCTGTGGCGACAAGGTGAGCGGCTATCACTATGGCCTGCTCACGTGTGAGTCCTGCAAGGGTTTCTTCAAACGTACGGTACAAAACAAGAAGGTCTACACTTGTGTTGCGGAACGTTCCTGCCACATTGATAAGACGCAGCGAAAACGTTGTCCGTATTGCCGATTCCAAAAGTGCTTGGAGGTGGGCATGAAACTGGAAGCTGTTCGAGCGGATCGCATGCGAGGTGGACGGAATAAATTTGGACCCATGTACAAACGGGATCGTGCGCGAAAATTGCAAGTTATGCGTCAGAGACAGCTGGCGCTGCAGGCATTACGCAGTTCCATGGGTCCGGACATAAAGCCCACGCCGCTTTCACCGGGCTATCAGCAAGCATATCCAAATATGAATATTAAGCAAGAAATACAAATACCTCAGGTATCCTCACTCACGCAATCGCCGGACTCATCGCCCAGCCCCATAGCCATCGCCTTGGGTCAGGTGAATGCCAGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTCATGAAACTGGCACTGGATCTCTGCAGAATACAGCCGAATCGAAATTGTGCTATGATTCTGGCACACATCCATCGAGCACAGCCGATTCGCTTATCGAACCGTTAAGGGTCTCGCCGATGATACGTGAGTTTGTGCAATCGATCGATGATCGGGAATGGCAAACGCAACTGTTTGCGCTACTGCAAAAGCAAACGTACAATCAAGTTGAAGTGGATCTCTTTGAGCTAATGTGCAAAGTGCTTGATCAGAATTTGTTCTCACAAGTGGATTGGGCAAGGAACACCGTCTTCTTTAAGGATTTGAAGGTTGACGATCAAATGAAGCTGTTACAACACTCTTGGTCCGATATGCTTGTACTAGATCATCTGCATCATCGAATACATAATGCGCTGCCGGATGAAACGCAGCTCAACAATGGTCAGGTCTTTAATCTGATGAGTTTGGGCCTGTTGGGCGTGCCACAGTTGGGTGATTACTTTAATGAACTGCAAAATAAGCTGCTGGATTTAAAGTTCGATATGGGCGATTATGTATGCATGAAATTCCTAATATTGTTGAATCCAGCAGATGTGCGTGGCATTATCAACAAGAAGACCGTCTTGGAGGGTCATGAAAATGTGCAAGCAGCTTTATTGGATTACACGCTGACGTGTTATCCCTCAGTACATGAAAAATTCAGGAGGCTATTGAACATACTACCGGAAATACACGCCATGGCGTCGCGAGGTGAGGAACATCTGTACTCCAAGCATTGTGCAGGCAGTGCGCCAACTCAGACGCTGCTAATGGAAATGTTGCATGCCAAGCGAAAGGTATAA
Protein Sequence
MLFKMEPQQATYIFPTGYQDTTSSHSQQSGGGGGSGSVAGGSTGNVALLNGSSGNAGGGSGYMLLPPASSSSGHISGSVGGAGGGGHGGTSATSGVSGEAIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRSSMGPDIKPTPLSPGYQQAYPNMNIKQEIQIPQVSSLTQSPDSSPSPIAIALGQVNASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCHETGTGSLQNTAESKLCYDSGTHPSSTADSLIEPLRVSPMIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNALPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKLLDLKFDMGDYVCMKFLILLNPADVRGIINKKTVLEGHENVQAALLDYTLTCYPSVHEKFRRLLNILPEIHAMASRGEEHLYSKHCAGSAPTQTLLMEMLHAKRKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00337588; iTF_00339184; iTF_00339215; iTF_00335930; iTF_00335959; iTF_00338397; iTF_00338370; iTF_00336771;
90% Identity
iTF_00337588;
80% Identity
iTF_00337588;