Ccau006714.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza caudatula
Gene Symbol
ftz-f1
Assembly
GCA_035041775.1
Location
JAWNKW010000137.1:382442-403737[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 4 1.9e+04 -13.9 29.6 47 151 41 145 5 168 0.36
2 3 1.8e-19 8.6e-16 58.4 0.6 1 81 325 405 325 429 0.74
3 3 1.8e-71 8.7e-68 229.7 1.4 157 408 521 765 497 767 0.91

Sequence Information

Coding Sequence
atgttattcaaaatggagcaacaacaagcgaCAGTACAATTTATCTCGTCGCTAAATATGTCGCCCTTTTCCATGCAGCTGGATCAGCAACCGGCTAGTCCAGCACTGGCTAGcaatcagcagcaacagcagcagcagcagagcggtggcagcaacagcgccacaagcaacaataacaatgataACGATAACAACACATTAAGCAATTCCGATAACGATTATAGCGCTTACACGCTGCAGCTGACCGGCAGCAATCAAACAcatcaccagcagcagcagcagcagcaacaacatcacacacatcatcagcagcagcaacagcagcatacGCAACAGAACCACCAACAACATTACCAACAAcaggagcaacagcaacagaataTTGCCAACAACTCCAATCAATTCAACTCCTCATCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGATACCACTTCCTCGCATTCACAACAAagcggtggtggcggcggcggtggctcCGCAGCCGGTGGCAGCACTGGTAATGGCGCCAATGTTGCGCTACTAAACGGCAACTCTGGCAATgctggcggcggcggcggctctGGCTATATGCTGCTGCCACCTGCCACCAGCTCAAGCGGTCATTTAACTGGTAGTGTTGGCGGTGGCGgtgctggtggtggtggcCATGGTGGCACCAGCGCCACCTCCGGCGTTAGCGGTGAGGCCATTGATTTTAAGCATCTCTTTGAGGAGCTCTGTCCCGTCTGTGGTGACAAGGTGAGTGGCTATCACTATGGCCTGCTCACGTGTGAGTCCTGCAAGGGTTTCTTCAAACGTACGGTACAAAACAAGAAGGTCTACACATGTGTCGCGGAACGTTCCTGCCACATTGATAAGACACAGCGAAAGCGTTGTCCGTATTGCCGATTCCAAAAGTGCTTGGAGGTGGGCATGAAACTCGAAGCTGTTCGAGCGGATCGCATGCGTGGTGGACGGAATAAATTTGGACCCATGTATAAACGGGATCGTGCGCGAAAATTGCAAGTTATGCGTCAGAGACAGCTGGCGCTACAGGCATTACGCAGTTCCATGGGCCCGGACATAAAGCCCACGCCGCTTTCACCGGGCTATCAGCAGCAAGCATATCCAAATATGAATATTAAGCAAGAAATACAAATACCTCAGGTATCCTCACTCACGCAATCGCCGGACTCATCGCCTAGCCCCATATCCATCGCCTTGGGTCAGGTGAATGCCAGCACGGGAGGCGTGATAGCGACACCCATGAATGGCGGCGGAGTTGGTGGTGGGGGTGGCAATGGCGGCTCTGTGGGCAAcggcaatagcaacaacaatggcagcagcggcgCTGGCGGaggtggtggcggcggcggtggcaaTGCTGgcggcaataacaacagcgGTGATAGCCTGCAACGTAATGGAGGTGGCAatggcagcggcagtggcagcggctgTCATGAAACTGGCACAGGATCTCTGCAGAATACAGCCGAATCGAAATTGTGCTTTGATTCCGGCACGCATCCATCGAGCACAGCCGATGCGCTTATTGAACCATTAAGGGTCTCACCGATGATACGTGAGTTTGTGCAATCGATCGATGATCGGGAATGGCAAACGCAACTGTTTGCGCTGCTGCAAAAGCAAACGTACAATCAAGTTGAAGTGGATCTCTTTGAGCTGATGTGCAAAGTGCTGGATCAGAATTTGTTCTCTCAAGTGGATTGGGCAAGAAACACAGTCTTCTTTAAGGATTTGAAGGTTGACGATCAAATGAAGCTGCTGCAACACTCTTGGTCCGATATGCTTGTACTAGATCATCTGCATCATCGCATACACAATGGTCTGCCGGATGAAACGCAGCTTAACAATGGTCAGGTCTTCAATCTGATGAGTCTGGGCCTGTTGGGCGTGCCACAGCTGGGCGATTACTTTAATGAGCTGCAAAATAAGCTGCAGGATTTGAAGTTCGATATGGGCGATTATGTATGCATGAAATTCCTAATATTGTTGAATCCAGATGTGCGTGGTATTATCAACAAGAAGACCGTCTTGGAGGGTCATGAGAATGTGCAGGCAGCTTTATTGGATTACACGCTGACGTGTTATCCCTCAGTACATGAAAAATTCAGGAGGCTATTGAACATACTACCGGAAATACACGCCATGGCGTCGCGCGGCGAGGAGCATCTGTACTCCAAGCATTGTGCGGGCAGCGCGCCAACTCAGACGCTGCTAATGGAAATGTTGCATGCCAAGCGGAAGGTGTAA
Protein Sequence
MLFKMEQQQATVQFISSLNMSPFSMQLDQQPASPALASNQQQQQQQQSGGSNSATSNNNNDNDNNTLSNSDNDYSAYTLQLTGSNQTHHQQQQQQQQHHTHHQQQQQQHTQQNHQQHYQQQEQQQQNIANNSNQFNSSSYSYIYNFDSQYIFPTGYQDTTSSHSQQSGGGGGGGSAAGGSTGNGANVALLNGNSGNAGGGGGSGYMLLPPATSSSGHLTGSVGGGGAGGGGHGGTSATSGVSGEAIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPYCRFQKCLEVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRSSMGPDIKPTPLSPGYQQQAYPNMNIKQEIQIPQVSSLTQSPDSSPSPISIALGQVNASTGGVIATPMNGGGVGGGGGNGGSVGNGNSNNNGSSGAGGGGGGGGGNAGGNNNSGDSLQRNGGGNGSGSGSGCHETGTGSLQNTAESKLCFDSGTHPSSTADALIEPLRVSPMIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIINKKTVLEGHENVQAALLDYTLTCYPSVHEKFRRLLNILPEIHAMASRGEEHLYSKHCAGSAPTQTLLMEMLHAKRKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00337557;
90% Identity
iTF_00338397;
80% Identity
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