Camo005689.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- hang
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010001273.1:186973-203107[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-06 0.053 14.1 0.0 11 50 648 687 643 690 0.90 2 4 0.0027 33 5.1 0.0 11 44 786 819 777 826 0.77 3 4 0.48 5.9e+03 -2.1 0.0 20 34 1086 1100 1081 1109 0.76 4 4 0.043 5.3e+02 1.3 0.2 26 44 1336 1354 1325 1361 0.80
Sequence Information
- Coding Sequence
- ATGTGCGACGCTGccgcagccacaacaacaacaacggcagcgACCACATCGACGTCGTCCACGGTGGAACCTTTGCGGTCGCGACAAAGCTGCTGTCGCCTCTGTATTGCCCCCGCTACGGAATGCATTTCCATCATCAATAGCTATGCGGCCGATAAGGAGCCGCTCTCAACCAAAATTCAAAACTGCGTTAATATTAAGATCACACCACAGGATCGCCTCTCCTTGCAAATCTGTCATGCCTGCATAAGTTATTTGAATTCATGGCAGAGCTTTAAGAATCGCTGCCTTAGCTCACAAAGCAAGCAACGCAGTTGGCTGGACACAAATAAAtccaagcagcagcaacaacatttaTTAAACTATTTGGATTTAAATAGCGCAGAAAATGTGGATCAGCAACAACATGATCAACAGCTGGAGTTGGAGGAGAATGCTGCCACGGCAGCAGAAAAGTCTTCAGCTGCTAATATATTGGATGGCATTCCCTCGCTTAAGAAACGCAAATCTTTAACAGTTTATCCACTGCCAGCCGTACCTATAAAGGATGAACCCATTGATCCGGATGAGGATTATCAAATGAAGTCCTTAGATGAATCCGACGATATGGTGGACCCGACAATGTTCCTAGAGCGTTCCGAGCATGAGGGTGATATGCCGCTCATGACGTCTGACTATGATTATAAGCCGCAGCACAGCGTAACCGCAgcggctgctgcagcagctctaCCCGCCACTGTTGTGGCCAATGTAGCTGCTGCTGGCGATTCCAAGGTAGCCTCCTGTCGCGCATGCAGCTTGCAATTCTCAACGCGCGCTAACGCACGTCGTCATGAGCGCAATTTGCATCCAAATCTGTTTCAATTGTCCACGGACTCGCCCAATAATACGCCGATTACAAAACCAACGGCAGCTCTGGCTGCTGCCTTGGAGATTCAAAGAGCAGCGGCTGCTGCGGCCACCGCAGAGGCTACGCGTGCTGCAGCCAGCGGGAATATATCCACACAAAAGTATCGTCAGGTAGTCATGCATGCGTTTATGAAATGCGAGGGTGGTGGCTTCGATTATGAAAATCCTGAGCAGTATCAGCATTTGCTCAGCAAGGACAAGTATGAGTTTATACAGCAAAATAGCGAATTCTTGGAGCAATACCAGACAATGACATGCCGCTGTTGTAACAAGTACTTTAGTACATATAAGAACTTTATGGCACATGTGCGTAAGAAGTATCCAACGTTGCCACGTAATCTATGCTTCAACTGCCTCAAAATGAATGATTCCAAAGCGCTGTTCATATCGCACTTGAAAAAACGCAACTGTATCAATCTGTACAAAGTGCTCAATAGTTTGCGTGCTAAGCAGCCAAACTTTGTGCCCGCTGATGCCATCGCGTCGGTATCTACCTCGGATACATCGGTTGTGCCGGAAAAGCTACGAGCCAAGGAGTTGCTGGTTAATAAACTATACGAGTGTAAACTTTGCCCCAAGGGCTTTCGCACAAAGCATGAATTTCGCACGCACGTTTATGATAAGCATGCCGATGTGCAGCGCAAGGATAACAACTCTATACAATGCAGTTTTTGTGGCCTGGATTTTGCCGATCCGGTGGATAGGCGCCGCCACTATAATAATATGGATTGTATAGTTCGATTGCGTTGCATGACATGCGATGCTAAGCTAGAAACTCATCAGCGCTTTCTGGATCATGTCTATCAGGATCATTTGGGCGGCATAAGCAGCGATAATGCTTCGTCGGCCAGTGGACTTGCGCGTAGCAACAGCATGGAGCATTCGCCGGGAAAACGTAGTCTTTTGGGCGCCCTGGGCATTGGTGTATCCTCCTCGAATGAGGAAtcacgcagcagcagcgccgcaCCAACGCATACCTCTACACCCAAATTGGGTAGCGGCGCTTTGCCAGCACCAGGGAATACTTCTGGTGGTGGTGGAGCACCTAAATCACAGTACTTTTCGCGCATGCCCCAAGTGTGCCCCATTTGTGGACAGCAGTACAACAACTATAATAATGTGCTGCGTCATATGGAGTCAAAGCATCCCAATAAACTGCCAGAAACCTATAAATGTGTGCGTTGCGGCCTCGGCTATCCACGCATATCCTATTTGCGCGAGCATATGATTAATGTTCACGGTGTGGACAAAAATCGTCATTCTGGCGGTTTTGAGTATATCGTGAATGCGGATGCTGTCAAATTAGCGGATGGCAGCACGCCCAATGTGTACACTGGTCGGTACGACTATGTAATGAAGGATTTGATGTCGATAACAAATGGTGGGACACTCGATGACGAGGAGGAGGAGGCCAGCGTAGCCAAAAAGATTCGTCTTGACGATAGTGGCACTGCTGGCAACAATAATTCCAGCATCGGTAACCAGCAAAAGGAATGTCCCATTTGCAATTCAGTTTTTAGCAACAATATTGGTCTATCCAATCATATGCGCTCGCATTATACAGCTTCCAGTGCCACCAATGCCGCTTTGGCAGCTGCCAATAGAATGACACCCAAGTCATTGACCATCACAGCTACCAGTTCGGCTAAGACTACACCCACACCAGCAGCGGCTACAACAGCTAAtgtaagcagcagcagcggcagccttCCACCAGCCATGGCCAATCAAACACCCCAGGAGCAGGCCGTATTTAGACGTAGCTTGGATCAAGCGGCCGATAGACGTTTCCGTCGTATGCGTTGCCGCATTTGTCAGCGTCGCTTTAGTTCCAAAAAGTCTTATCGCTATCATATGCTAACCGATCATCAAGTGCAGAATGtacaatttattaaatgcaaGCTCTGCAACGCCGAGTTCGCCTATGAAAAGGGACTCAAAGTGCATCTGTTCAAAGTACACGGTACTGTGATCAAGGATGAGATGATTATAAAGCAGTTTGAATGTGAGGTTTGCTCGATTGTATACAGCTCTGAGTTGGAGTTGCAACAGCATAAGCGCAGCGTGCATAAACATACAGTACTTAATGCTGCTGGAGGCGGCGAATCCGCTCACAATGAGTCCGCAGTTAAAGACGAAGTTGtggatacttcagctgtggctgTTATGCCACTGTATTGGTATCAATGCAAATATTGTCCATCAAATTTCAATACCAATAAGAAGCTGGCCATACACATTAACTCCCACGATGAGTTTGATTCAAATGACTATTCCTGCAAAGATTGCGGCAATGTATATAGTGGACGTAAGAGCCTCTGGGTGCATCGCTATAAGAAGCATCCGCAGGTGCCAGATCCCGCCGAATGTGTGCTCTGTCGCAAAGTCTTTTTCGATCGCCAAATGTTGGATAATCACACGCCCACATGCAACCGCAAACCAATTACTGCCACAGGAGCACACCAACAGGATGTTAATGCTTCTTCAACGATGACCACGTCGACACGtgtttttaaacacaaaactggcgatgatgatgacgaggaAGATGAGCTTATGCTGGAGGATGGTGGAAGTGAGAGTAATATCCAaggtggtggccatttggctggcACTTCGAGCAATCAGCCTTTGAAGATACGTATACCAGAAGTGGCTTGTACGATATGCGGAGCTCGTTTTACTGATCAGGAAATGTTTAGCAAGCACATACAAAAGCATGAACAAGAATTGTATACAGACAATCCTTTGGCGGCTATGTTTGACGATGGTCCTGTTGATCAAAGTCAGTTTTATGTGGAGCGACCAAATGAGAACGGGGAATATGCTTGTGACTTATGCGCCAAGACATTCCCCCAGGTGATTGCGCTCAAGGTGCATCGCAAATGGCATTTCAGAGGTGATAGCAAGCAGAATCCCAACGACGGCGAAGCGAcacagaacaacaacagcaacaacaacacggcGAACTCGTCGATGCTGCACCTACGGGAACTGCACGCAGTGGGGTTAATGCCAAATCAACAACGTCttcacaacaacagcagctcgGGTGCAGCAACATCGAGCAAATCCCTGAAACGCAAACGTGAACTTAAATGTGAATATTGCGCCTCGACCTTTATAAGTAACAATAATCTTCGTCGTCATATGTATGAGCTGCATAAACATGAGGTTAGCAATTTACCAGAACCACCAGTTATAGAAGTGGATAAGCCATTGTCCTGCCGACGCTGTGatctcaaatttaaaacaaaggaATTGTGGATAGAACACAAATTGGCCGATGCCAAGGTAACACGTCCTTTCTGTCCATTTCAATGGGGCTGTGATTTATGTGGCGAGTATTTGTCgcgaaaagaaaaattaattaatcatatAAACAATCATTTAAAAGAGGAGGTAATAGTGCCAGTACCAGTGGTAACTAAGACTATATCAAATAAATCAGCGAGCGAGACACcaaccaacaaaaaaccaaGTAATGTAACAACAACACCGAAAAAGTTAAcaagcagcagcggcggcggcatgGTGCCTGAAAAAGGGACACCAAAAGCAGCTAATGCCACGCAGCAAGCCAAGGAAAAGCCAGTTGTAAAAAATGAGACGGAGAAAGCAACTGAAGAGCAAGAAGACACAGATGTTGATGAGGAGGATGATGAAGACAATAGCTCTGATGATGAGGATGGTGcagaagatgatgatgacagcacagatgatgatgacgacgacgatgatgatgatgatgacgacgacgatgatgaggaGGAGGAAAGCGAAAACGATCCATCATTGttgcacaacaataacaataacagcaacCACAATTTGGTTGCAGGCAGAGCTACGAATACGAATGAGCTAGAAGATGATGATCTAGTAGAGCATATTGAGGAATTGGATGATGATGTAGacgaagacgacgacgatgatgatgatgacgatgatgacgaagatgatgaagaagatGGAGATGGCGAAGGAGAAGAGCCGGTAAATCGTGGCGCAAAGTTACAGGTGCCGACGCATGTTACCTTTGATGGCATTGAATATATACGCACTAGCAAACATAAGCGTGTTAAtggcaagcaacaacaacagcaacagcgcaACAATtccaatgatgatgataagcGGGCGCATGTTGTTAATAATGAAGGACAAGTAAATAATGCTGTTAATAAAATGCATCAGGTCATAGCTGAcagtgatgatgatgaagatgatgatgaggagGAAGATGTTGATGAGGATATGGatgatgatgacgatgatgatgatgatgaggatgacgaTGAAAGTGAGTCAACAACATCGCATTCAACTGGTGAGCGgcgtaaacataaaaatatacataataaaaaaacagcagcagcagcagcagccataaATTCAAATGCTGCTGCTGATTGCAGCATTGAACAGTCTAGTAATTCCAGTTATACGTGTGATCTATGTCAACTTTGTTTCGATTCTCAGGAGCTTCTACAAACTCACATCAAAAGTCATTTTCTCAATGGACCGCAAGTCGCTAGCAATGGTACAAAGGCGGCAGCCAacacaacaaccaacaacacaaccaacacaacaacaacaacaacaccacaagcgtcaacaaataacaacaataaaagcaaaccGTCCTGCATGGATATGAAAAGTCCAACAGCGgctgcagcaacaactgcaaGCAATTGA
- Protein Sequence
- MCDAAAATTTTTAATTSTSSTVEPLRSRQSCCRLCIAPATECISIINSYAADKEPLSTKIQNCVNIKITPQDRLSLQICHACISYLNSWQSFKNRCLSSQSKQRSWLDTNKSKQQQQHLLNYLDLNSAENVDQQQHDQQLELEENAATAAEKSSAANILDGIPSLKKRKSLTVYPLPAVPIKDEPIDPDEDYQMKSLDESDDMVDPTMFLERSEHEGDMPLMTSDYDYKPQHSVTAAAAAAALPATVVANVAAAGDSKVASCRACSLQFSTRANARRHERNLHPNLFQLSTDSPNNTPITKPTAALAAALEIQRAAAAAATAEATRAAASGNISTQKYRQVVMHAFMKCEGGGFDYENPEQYQHLLSKDKYEFIQQNSEFLEQYQTMTCRCCNKYFSTYKNFMAHVRKKYPTLPRNLCFNCLKMNDSKALFISHLKKRNCINLYKVLNSLRAKQPNFVPADAIASVSTSDTSVVPEKLRAKELLVNKLYECKLCPKGFRTKHEFRTHVYDKHADVQRKDNNSIQCSFCGLDFADPVDRRRHYNNMDCIVRLRCMTCDAKLETHQRFLDHVYQDHLGGISSDNASSASGLARSNSMEHSPGKRSLLGALGIGVSSSNEESRSSSAAPTHTSTPKLGSGALPAPGNTSGGGGAPKSQYFSRMPQVCPICGQQYNNYNNVLRHMESKHPNKLPETYKCVRCGLGYPRISYLREHMINVHGVDKNRHSGGFEYIVNADAVKLADGSTPNVYTGRYDYVMKDLMSITNGGTLDDEEEEASVAKKIRLDDSGTAGNNNSSIGNQQKECPICNSVFSNNIGLSNHMRSHYTASSATNAALAAANRMTPKSLTITATSSAKTTPTPAAATTANVSSSSGSLPPAMANQTPQEQAVFRRSLDQAADRRFRRMRCRICQRRFSSKKSYRYHMLTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGTVIKDEMIIKQFECEVCSIVYSSELELQQHKRSVHKHTVLNAAGGGESAHNESAVKDEVVDTSAVAVMPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQVPDPAECVLCRKVFFDRQMLDNHTPTCNRKPITATGAHQQDVNASSTMTTSTRVFKHKTGDDDDEEDELMLEDGGSESNIQGGGHLAGTSSNQPLKIRIPEVACTICGARFTDQEMFSKHIQKHEQELYTDNPLAAMFDDGPVDQSQFYVERPNENGEYACDLCAKTFPQVIALKVHRKWHFRGDSKQNPNDGEATQNNNSNNNTANSSMLHLRELHAVGLMPNQQRLHNNSSSGAATSSKSLKRKRELKCEYCASTFISNNNLRRHMYELHKHEVSNLPEPPVIEVDKPLSCRRCDLKFKTKELWIEHKLADAKVTRPFCPFQWGCDLCGEYLSRKEKLINHINNHLKEEVIVPVPVVTKTISNKSASETPTNKKPSNVTTTPKKLTSSSGGGMVPEKGTPKAANATQQAKEKPVVKNETEKATEEQEDTDVDEEDDEDNSSDDEDGAEDDDDSTDDDDDDDDDDDDDDDDEEEESENDPSLLHNNNNNSNHNLVAGRATNTNELEDDDLVEHIEELDDDVDEDDDDDDDDDDDEDDEEDGDGEGEEPVNRGAKLQVPTHVTFDGIEYIRTSKHKRVNGKQQQQQQRNNSNDDDKRAHVVNNEGQVNNAVNKMHQVIADSDDDEDDDEEEDVDEDMDDDDDDDDDEDDDESESTTSHSTGERRKHKNIHNKKTAAAAAAINSNAAADCSIEQSSNSSYTCDLCQLCFDSQELLQTHIKSHFLNGPQVASNGTKAAANTTTNNTTNTTTTTTPQASTNNNNKSKPSCMDMKSPTAAAATTASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336130; iTF_00337745; iTF_00338566; iTF_00339326;
- 90% Identity
- iTF_00336130; iTF_00338566;
- 80% Identity
- iTF_00336130;