Camo012573.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza amoena
Gene Symbol
Hr39
Assembly
GCA_037043745.1
Location
JBAMAX010002688.1:64611-69295[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.12 1.5e+03 -1.3 0.5 79 131 11 65 2 84 0.60
2 4 0.2 2.4e+03 -2.0 0.1 131 183 140 190 128 221 0.63
3 4 2 2.5e+04 -7.8 9.1 53 107 290 337 183 414 0.56
4 4 5.5e-98 6.7e-94 316.1 9.7 1 408 481 863 481 863 0.80

Sequence Information

Coding Sequence
atgcCCAATATGTCCAGCATAAAGACGGAGCAGACTCCGTCCACCGCTAATAACAGCAGCAGTGGCACCAGCAGCTATCAGCTACCAGTCAACATGTCCACGACGACGACATCCTCGGGCTCAACATCCATCAGCAATGCACGGCACAATGTCTCTGTGACGAATATCAAGTGTGAGCTGGATGAGCTGCCCACGCCAAATGGAAATCTGGTGCCAGTTATAGCTAACTATAATGGTTTAAGCGGTGCGGGACCGCCCCATCATGGAAGTCTACGTATACCACTAAGCGGCAAAGCCGAGGATTCCGACTCCGAAGCTGAGCTAACCAATATTGAGAATTTAAAGGTGCGCCGTCGTGCAGCCGATAAGAACGGACCACGACCCATGTCGTGGGAGGGTGAGCTTAGCGAACCGGAGACTACGGAAACAGAGCTAATGGAAACGGATACATTAAGCAATGGCGTAGGCGTTTCGGTCATCAAAAGCgaggccaccacaaccacgcccTCGGTTTGCAGCGGCGCAATACCGACTGGCATGCTGCAGCCCATTAAGACAGAGTTGGAGCACATTGCCGGTGAAATGCAGCAGAATAAGTTGTACGGTAGTTCGGCGACAAACACGTCAACGACGGGAGCTAATACACCTGCTAAGCTGAAGCTTGCGCCCACTCAAAGCGATCCCATTAATCTCAAGTTTGAACCGGCGTTGACTGCTGGCTCGGGCAGCGCTTTGGGCGTAACCGGCGATAACTCACCGCTACTGACGACGCGCAACAAGTCCAACAGCGGTGGCCATTTGCCGCTGCCTGCCAATCCCAGTCCAGACTCCGCCATACATTCCGTCTATACGCACAGCTCGCCATCGCAGTCGCCGCTAACGTCGCGTCACGCCCCGTATACGCCTTCTTTAAGCCGTAACAACAGCGATGCTTCGCACAGCTCCTGCTATTCCTACAGCTCAGAATTTAGTCCCACACACTCGCCAATACAGGCACGTCATGCGCCGCCAGCGGGTGCATTATATCCTACAGGATATGCCAATGGTGGCATGCATCCTCATAGCGTGTTATATAGGCCGCTAAATGTGGAAGCCGGTGGCCAGGAGGCGCAAAATCTCAGCATGGATGCCAGCAGTTCAACGCCAAACACAAGCACTGGACCGGCATTCGATGCATCTGGTTTGCCAGCCTCGCCTGCAGGCATCTCCCGTCAGCAGCTCATTAACTCGCCATGTCCCATTTGTGGCGATAAAATATCTGGCTTCCATTATGGCATCTTTTCCTGCGAGTCTTGCAAAGGTTTCTTTAAGCGCACCGTGCAAAATCGCAAGAACTACGTCTGCGTGCGTGGTGGTCCCTGCCAAGTGAGCATTTCCACACGCAAGAAGTGTCCGGCTTGCAGGTTTGAGAAATGCCTTCAGAAAGGCATGAAACTGGAGGCCATACGTGAGGATCGCACGCGTGGCGGGCGCTCTACCTATCAATGCTCCTATACACTGCCCAATGCCATGCTCAGTCCGCTGCTAAGTCCGGATCAGGCAGCGGCAGCTGCGGCGGCAGCATCTGCAGCAGCGGTGGCAGCCAACCAGCAACAGCACcaacagttgcaacaacaacagcatcagcGACTACATCAGCAACATGGACTTAATGGTTTTGGCAGCGGAGGTTCCACATCGTTGCCGTCTAGCCCTAGTTTGGGCGCATCGATCAAAACTGAGCAGACGGATACGGCTGGTGGTCATATGCCAAGGGCAGCCAGCATACCAACGTTATTGCAGgaaatCATGGATGTTGAACATCTCTGGCAATACACAGATGCTGAACTGGCTCGCATTAATCAGCCACTGTCCTCGTTTGCCTCTGGATCCTCTTCTGCTACTGCCAACGGTGAAAGCGGCTCTGCAGCGAATCAAAGTCCACAACACACTGCCAATGCACAACAAATGACCAATCCACTGCTGGCCAGTGCTGGTCTCTCATCAAATGGTGAGAATGCCAATCCCGATCTTATTGCTCATCTCTGCAATGTTGCCGATCATCGTCTGTACAAGATTGTCAAGTGGTGCAAGAGTTTGCCGctatttaagaatatttcgATCGATGATCAGATTTGTTTGCTCATAAATGCCTGGTGTGAGTTGCTGTTATTCTCCTGCTGTTTTCGCTCCATCGATACGCCAGGCGAGATCAAGATGTCACAAGGTCGTAAGATAACGCTGTCGCAGGCGAAGACAAATGGTTTGCAGGCCTGCATCGAACGTATGCTCAATCTGACAGATCATTTGAGACGTTTACGCGTTGATCGCTATGAATATGTTGCCATGAAGGTCATAGTGCTGCTGCAGTCCGATACCTCGGAGCTGCATGAGCCCGTCAAAGTGCGTGAATGCCAGGAGAAGGCATTGCAAAGCTTGCAAGCGTATACGCTCGCACATTATCCCGATGCGCCGTCCAAATTTGGGGAACTATTGCTACGCATTCCCGATCTCCAACGCACGTGTCAGCTGGGCAGAGAGATGCTGACCATCAAGACACGAGATGGAGCCGATTTTAATCTGTTAATGGAACTGCTACGCGGAGAACATTGA
Protein Sequence
MPNMSSIKTEQTPSTANNSSSGTSSYQLPVNMSTTTTSSGSTSISNARHNVSVTNIKCELDELPTPNGNLVPVIANYNGLSGAGPPHHGSLRIPLSGKAEDSDSEAELTNIENLKVRRRAADKNGPRPMSWEGELSEPETTETELMETDTLSNGVGVSVIKSEATTTTPSVCSGAIPTGMLQPIKTELEHIAGEMQQNKLYGSSATNTSTTGANTPAKLKLAPTQSDPINLKFEPALTAGSGSALGVTGDNSPLLTTRNKSNSGGHLPLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQARHAPPAGALYPTGYANGGMHPHSVLYRPLNVEAGGQEAQNLSMDASSSTPNTSTGPAFDASGLPASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNAMLSPLLSPDQAAAAAAAASAAAVAANQQQHQQLQQQQHQRLHQQHGLNGFGSGGSTSLPSSPSLGASIKTEQTDTAGGHMPRAASIPTLLQEIMDVEHLWQYTDAELARINQPLSSFASGSSSATANGESGSAANQSPQHTANAQQMTNPLLASAGLSSNGENANPDLIAHLCNVADHRLYKIVKWCKSLPLFKNISIDDQICLLINAWCELLLFSCCFRSIDTPGEIKMSQGRKITLSQAKTNGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELHEPVKVRECQEKALQSLQAYTLAHYPDAPSKFGELLLRIPDLQRTCQLGREMLTIKTRDGADFNLLMELLRGEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00335955; iTF_01319789; iTF_01319811; iTF_00339183; iTF_00339210; iTF_00337556; iTF_00337584; iTF_01319064; iTF_01319081; iTF_00338393; iTF_00338369; iTF_00336800; iTF_00336770;
90% Identity
iTF_00336800;
80% Identity
iTF_00335955;