Cver022662.1
Basic Information
- Insect
- Cheilosia vernalis
- Gene Symbol
- -
- Assembly
- GCA_949126925.1
- Location
- OX421361.1:45578024-45591845[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-10 9.3e-08 32.5 0.0 1 38 360 398 360 403 0.89 2 4 3.9e-13 2.9e-10 40.5 0.1 2 39 415 452 414 455 0.94 3 4 1.2e-17 8.8e-15 55.0 0.0 1 45 469 514 469 514 0.98 4 4 5.6e-19 4.2e-16 59.2 0.0 1 42 521 563 521 566 0.96
Sequence Information
- Coding Sequence
- ATGGTTGAACTGGCCAGTCTTCTGTCAGGTCAGGGCCTTCTACGTACAGCCGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAGAGGCGGCCACAGCGACCATCACTGTTTCAGAAAATATAACACAGGCGGTTGTTGGGAACATTGTGAATGCAACACAGGGTAATGCAATAGTTACAACACATACAATTGCCAACAACACAAATACGCatacaacaacagcaaacttaaacaataacaataatattaaTTCAAATATTAATGCTGTAGTTGCACCGACAACGGCCACATCCACGCCCCAGCTACGAAAATCTCGGGTCAGAAAACGCTCCAAGTCGCCGGATACTAAtctgcagcaacaacaacagcagcagcatcaacaacaacaacagcagcagcagcagcaccaccaacaacaacagcaacatcaacaacagcagcaacagcaccaTCAAGCAatattaagtcaaaatcttaATACAGCGGCAATAGTTAGCCTGCAACAGACGTCGTCGGGCAACTATATACCAGTGTCTGGGGGTCAGACGATAACGACGACTGCTGTTAGCCAACACAACTCCGAGGACTCAGATTCCGATAAGCCAACATCGCAGAAAATTTGCAAAACCGAAGCGGCCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTAACACAAATTGTAGTAGCACGCGACGGCAAAGATAATAAAAACATGACCAGTCTAGGAATGGGAATGAAGTTCACTGAATTTGAAGAGTTTGGAAACTCGTGTAATATAAAAGCAGCTGGAACAGAAACTCTGAAGGCTCTAGGGAGAGGAACAATTCGAATGCTATCAACTGTAAATGGTCGAAATCAAAAAATAACATTGGAAGATGTTTGGTATGTTCCAAaTATATACTCAGATGCCAGCGAGGATTCATTGATGATAGCGAATGGTTCCCCAAATGACAATAATGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGCATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGTATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAACGAAGATTCATTAAACAGCGCTCTGGAGGCTTTGCGAACTGGCCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACACTGTACAAGATTGCACGACGCGAGGGTATACGATTGGCGGCACCATTCAATGCGGCGCCTACAACATGGACGCCCGAGGATTTAGAGCGTGCTCTGGAGGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCTGAATTTGGTATACCAacagGCACACTTTATGGTCGTTGTAAGCGTGAGGGTATTGAATTGTCGCGCTCAAATCCGACACCATGGTCGGAGGATGCTATGAATGAGGCGTTAAATTCTGTTAGAGTCGGACAGATGTCCATCAATCAGGCGGCTATTCACTACAACCTTCCCTATAGTTCCCTGTATGGTCGCTTCAAGCGCGGTAAATACGACATTGCTAACACGAGTGCTTCGTCGATTAACAACACATCGGGCAACACAAGCGGTAGCATTGAAATAATCGAGCATAGTCCAGAGAATTCGTTACACATGTTTCAGCAACAATTCCAATACAGTCCAGCGCCGCAGTCTAATCATCaaacccaacaacaacaacaacagcagcagcagcaacaacagcaacagcagcaacaacaacagcagcagcagcatcaacaacaccaacagcaacccCAACACATCCATCAACATCAGGATGTTGTTACCTCAACAAGTCAGGTTCACACCCAAGCTGGACAAATCCAACAGATCTATCACCATCACAGCACCCCCGAGAGGAGTTGA
- Protein Sequence
- MVELASLLSGQGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNATQGNAIVTTHTIANNTNTHTTTANLNNNNNINSNINAVVAPTTATSTPQLRKSRVRKRSKSPDTNLQQQQQQQHQQQQQQQQQHHQQQQQHQQQQQQHHQAILSQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAVSQHNSEDSDSDKPTSQKICKTEAANSPTSNNGSVTVAQGTAIVTQIVVARDGKDNKNMTSLGMGMKFTEFEEFGNSCNIKAAGTETLKALGRGTIRMLSTVNGRNQKITLEDVWYVPNIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQHQQHQQQPQHIHQHQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315068; iTF_00724686; iTF_00310944;
- 90% Identity
- iTF_00315068;
- 80% Identity
- -