Cvar023531.1
Basic Information
- Insect
- Cheilosia variabilis
- Gene Symbol
- -
- Assembly
- GCA_951230905.1
- Location
- OX579679.1:18149085-18163114[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-10 9.3e-08 32.5 0.0 1 38 359 397 359 402 0.89 2 4 5.6e-13 3e-10 40.5 0.1 2 39 414 451 413 454 0.94 3 4 1.7e-17 8.9e-15 55.0 0.0 1 45 468 513 468 513 0.98 4 4 7.9e-19 4.2e-16 59.2 0.0 1 42 520 562 520 565 0.96
Sequence Information
- Coding Sequence
- ATGCTCACACTGTTGCAGGAACTGGATGAACTGGCCAGTCTTCTGTCAGGTGCAGCAGCCGGCCTTCTACGTACAGCCGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAGAGGCGGCCACAGCGACCATCACTGTTTCAGAAAATATAACACAAGCGGTTGTTGGGAATATTGTGAATGCGACACAGGGTAATGCAATAGTTACAACACATACAATTGCAAACAACACAAATACGcatacaacaacagcaaacttaaacaataacaataatattAATGCAAATATTAATGCTGTAGTTGCACCGACAACGGCCACATCCACGCCCCAGCTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCGCCGGATACGAatctgcaacaacaacaacagcagcaacatcaacaacaacagcagcagcagcagcaccaacaacagcaacatcaacaacagcagcagcagcaccatcaAGCAATATTAAGTCAAAATCTTAATACAGCGGCAATAGTTAGCCTGCAACAGACGTCGTCGGGCAACTATATACCTGTGTCTGGGGGTCAGACGATAACGACGACTGCTGTTAGCCAACATAACTCCGAGGACTCAGATTCCGACAAGCCAACATCGCAGAAAATTTGCAAAACCGAAGCGGCCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTAACACAAATTGTAGTAGCACGCGACGGAAAAGATAAAAACATGACCAGTCTAGGAATGGGAATGaaCGGCGGTCTCCTCGGAGTACCAATGGGATTCTTAGATTTTGCACCTGAACCACCAGCACCATCAGCCACGCCTGTAACCGTGACGGAGCATGTCGACTTATCCTGCAATCCCAGTACAGATACCCGAGATCTATCAAATATATACTCAGATGCCAGCGAGGATTCATTGATGATAGCGAATGGTTCCCCAAATGACAATAATGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAACGAAGATTCATTAAACAGCGCTCTGGAGGCTTTGCGAACTGGCCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACACTGTACAAGATTGCCCGACGCGAGGGTATACGATTAGCTGCACCATTCAATGCGGCGCCTACAACATGGACGCCCGAGGATTTAGAGCGTGCCCTGGAGGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCCAGCTCTGAATTTGGTATACCAACAGGCACTCTTTATGGTCGTTGTAAGCGTGAGGGTATTGAATTATCGCGCTCGAATCCGACACCTTGGTCGGAGGATGCTATGAATGAGGCGTTAAATTCTGTTAGAGTCGGACAGATGTCCATCAATCAAGCGGCTATTCACTACAACCTTCCCTATAGTTCCCTGTATGGTCGCTTCAAGCGCGGTAAATACGACATTGCTAACACGAGTGCATCTTCGATTAACAACACATCGGGCAACACAAGCGGTAGCATTGAAATAATCGAGCATAGTCCAGAGAATTCGTTACACATGTTTCAGCAACAATTCCAATACAGTCCAGCGCCGCAGACTAATCATCaaacccaacaacaacaacagcaacagcagcagcaacaacagcagcagcagcaacagcaacaacaacagcagcagcagcatcaacaacacCAACAGCAACCCCAACACATCCATCAACATCAGGATGTTGTTACCTCAACAAGTCAGGTTCACACCCAAGCTGGACAAATCCAACAGATCTATCACCATCACAGCACCCCCGAGAGGAGTTGA
- Protein Sequence
- MLTLLQELDELASLLSGAAAGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNATQGNAIVTTHTIANNTNTHTTTANLNNNNNINANINAVVAPTTATSTPQLRKSRVRKRSKSPDTNLQQQQQQQHQQQQQQQQHQQQQHQQQQQQHHQAILSQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAVSQHNSEDSDSDKPTSQKICKTEAANSPTSNNGSVTVAQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQTNHQTQQQQQQQQQQQQQQQQQQQQQQQQHQQHQQQPQHIHQHQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315857;
- 90% Identity
- iTF_00724686; iTF_00315857; iTF_00310944;
- 80% Identity
- -