Cgro019939.1
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720148.1:41137454-41160899[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 7.2e-08 32.4 0.0 1 38 397 435 397 440 0.89 2 4 4.4e-13 2.3e-10 40.4 0.1 2 39 452 489 451 492 0.94 3 4 1.3e-17 6.9e-15 54.9 0.0 1 45 506 551 506 551 0.98 4 4 6.2e-19 3.2e-16 59.1 0.0 1 42 558 600 558 603 0.96
Sequence Information
- Coding Sequence
- ATGGTGTATCGTGTGTGTGGTGAAGATGTGGGTCTTCTACGTACAGCCGAGCAATTGAAAATCAAAGGCCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAGAGGCGGCCACAGCGACCATCACTGTTTCAGAAAATATAACACAGGCGGTTGTTGGGAATATTGTGAATGCAACACAGGGTAATGCAATAGTTACAACACATACAATTGCCAACAACACAAATACGCATACAACAACAGCAAActtaaacaataacaataatattaatTCGAATATTAATGCTGTAGTTGCTCCGACAACGGCCACATCCACGCCCCAGCTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCGCCGGATACAAatctgcaacaacaacaacagcagcagcatcaacaacaacaacagcaacagcaccaacaacagcaacatcaacaacagcagcagcagcaccaccatcAAGCAATATTAAGTCAAAATCTTAATACAGCGGCAATAGTTAGCCTGCAACAGACGTCGTCGGGCAACTATATACCAGTGTCTGGGGGTCAGACGATAACGACGACTGCTGTTAGCCAACATAACTCCGAGGACTCAGATTCCGATAAGCCAACATCGCAGAAAATTTGCAAAACCGAAGCGGCCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCGCACAGGGAACAGCAATTGTAACACAAATTGTAGTAGCACGCGACGGAAAAGATAATAAAAACATGACCAGTCTAGGAATGGGAATGAACGGCGGTCTCCTCGGAGTACCAATGGGATTCTTAGATTTTGCACCTGAACCACCAGCACCATCAGCCACGCCTGTAACCGTGACGGAGCATGTCGACTTATCCTGCAATCCCAGTACAGATACCCGAGATCTATCAAATCCCACCGAAGCGCTCGATATTGACAATCATTTAGCACAACACATGATCCAACGACTTGATCAGTCGCCCATGCATACGATTCACCATCAGTCGTCTACGGGCGATGAGAGCAACTCCAATCTGATCCAGCATATTAAGAATATATACTCAGATGCCAGCGAGGATTCATTGATGATAGCGAATGGTTCCCCAAATGACAATAATGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACATTGTGGCAACGTGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAACGAAGATTCATTAAACAGCGCTCTGGAGGCTTTGCGAACTGGCCAGATATCAGCAAATAAAGCCTCGAAGGCGTATGGTATTCCGTCCTCGACACTCTACAAGATTGCACGACGCGAAGGTATACGATTGGCGGCACCATTCAATGCGGCGCCTACAACATGGACGCCCGAGGATTTAGAGCGAGCTCTGGAGGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCTAGCTCTGAATTTGGTATACCAacagGCACACTTTATGGTCGTTGTAAGCGTGAGGGTATTGAGTTATCGCGCTCAAATCCGACACCTTGGTCGGAGGATGCTATGAATGAGGCGTTAAATTCTGTTAGAGTCGGACAGATGTCCATCAACCAAGCGGCTATTCACTACAACCTTCCCTATAGTTCCCTGTATGGTCGCTTCAAGCGCGGTAAATACGACATTGCTAACACGAGTGCATCGTCGATTAACAACACATCGGGCAACACAAGCGGTAGCATTGAAATAATCGAGCATAGTCCAGAGAATTCGTTACACATGTTTCAGCAACAATTCCAATATAGTCCAGCGCCGCAGTCTAATCATCaaacccaacaacaacaacagcaacagcagcagcaacaacagcaacagcagcaacagcaacaacaacagcagcagcatcaacaacaccaacagcaaCCCCAACACATCCATCAACATCAGGATGTTGTTACCTCAACAAGTCAGGTTCACACCCAAGCTGGACAAATCCAACAGATCTATCACCATCACAGCACCCCCGAGAGGAGTTGA
- Protein Sequence
- MVYRVCGEDVGLLRTAEQLKIKGLCETAESVDDISEAATATITVSENITQAVVGNIVNATQGNAIVTTHTIANNTNTHTTTANLNNNNNINSNINAVVAPTTATSTPQLRKSRVRKRSKSPDTNLQQQQQQQHQQQQQQQHQQQQHQQQQQQHHHQAILSQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAVSQHNSEDSDSDKPTSQKICKTEAANSPTSNNGSVTVAQGTAIVTQIVVARDGKDNKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEALDIDNHLAQHMIQRLDQSPMHTIHHQSSTGDESNSNLIQHIKNIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDIANTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQQHQQHQQQPQHIHQHQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315857;
- 90% Identity
- iTF_00315068;
- 80% Identity
- -