Fcup023032.2
Basic Information
- Insect
- Ferdinandea cuprea
- Gene Symbol
- -
- Assembly
- GCA_963576555.1
- Location
- OY754961.1:35604991-35614576[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 9.6e-08 32.5 0.0 1 38 342 380 342 385 0.89 2 4 1.1e-12 7.9e-10 39.1 0.1 2 39 397 434 396 437 0.94 3 4 1.3e-17 9.1e-15 54.9 0.0 1 45 451 496 451 496 0.98 4 4 5.9e-19 4.1e-16 59.2 0.0 1 42 503 545 503 548 0.96
Sequence Information
- Coding Sequence
- ATGCCATTTGGTCTCCTACGGACAGCAGAGCAATTGAAAATCAAAGGTCTTTGCGAAACAGCCGAAAGTGTTGATGATATCTCAGAGGCAGCAACCGTCACAGTTTCGGAGAATATATCGCAAGCTGTTGTTGCGAATATAGTAAATCCAGTACAGGGTAATGCAATAGTTACAACACACACCATTGCAAACAACACAAATACGCATACAACAACAGCTAacttaaataataacaataatattaaCAATTCAAATATTAATGCTGTAGTTGCTGCACCAACGGCCACATCCACGCCCCAACTACGAAAATCTCGGGTCAGAAAACGCTCAAAGTCTCCGGATACGaatcagcagcaacaacaacagcagcagcaacagcatcaacagcagcagcaccaacatcaacaacaacaccaacaacaacaccaacaacaccaTCAGCAACAAGCAATATTAAGTCAAAATCTTAATACTGCAGCAATAGTTAGCTTGCAACAAACGTCTTCGGGTAACTATATACCAGTCTCTGGGGGCCAGACGATAACGACAACGGCCATAAGCCAACAAAATTCAGAAGATTCAGATTCGGATAAGCCAACATCgcagaaaatttgcaaaacagaAGCGTGCAACTCACCGACATCGAATAATGGCAGTGTAACTGTCCAACAGGGAACAGCAATTGTGACACAAATCGTTGTAGCACGCGACGGAAAGGATAAAAACATGACGAGTCTAGGAATGGGAAtgAACGGTGGTCTCCTCGGAGTACCAATGGGTTTCTTAGATTTTGCACCTGAACCACCAGCGCCATCCGCTACGCCTGTAACAGTGACGGAACACGTCGACTTGTCATGCAATCCCAGCACGGATACCCGAGACTTATCAAATATATACTCAGATGCCAGCGAGGATTCATTGATGATTGCGAATGGTTCCCCCAATGACAATAATGAGCCACACTATACGAATTTGGACCAACCACATGATAAACAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGTTTGACGAAAGCCTCTGTGACGTATGGTATCCCATCGACAACCTTGTGGCAACGCGCCCATCGCATGGGCATTGAAACACCCAAAAAGGAGGGCGGTACCAAATCATGGAATGAAGATTCATTGAACAGCGCTCTGGACGCATTGCGAACTGGCCAAATATCAGCAAATAAAGCCTCGAAGGCGTACGGTATTCCGTCCTCGACATTATATAAGATTGCACGACGCGAGGGTATACGACTGGCGGCACCATTCAATGCGGCGCCCACAACGTGGACACCCGAAGATTTAGAACGTGCTTTAGAGGCCATTCGTGCTGGTCATACGTCCGTCCAAAAGGCCAGCTCAGAGTTTGGTATACCAACAGGTACACTTTATGGTCGCTGTAAGCGTGAAGGTATTGAATTGTCTCGTTCTAATCCGACACCGTGGTCAGAGGATGCTATGAATGAGGCATTAAACTCCGTTAGaGTTGGACAAATGTCTATCAACCAAGCGGCTATTCACTATAACCTCCCCTATAGTTCCCTGTATGGCCGCTTTAAGCGCGGTAAATATGACATCACGAACACGAGTGCATCGTCAATCAACAACACATCAGGCAACACAAGTGGAAGCATTGAAATAATCGAACATAGTCCAGAAAATTCGTTACACATGTTTCAGCAACAGTTCCAATACAGTCCAGCGCCGCAGTCTAATCATCAAAcccaacaacagcagcagcaacaacaacaacaacaacagcaacagcagcagcaacaacaacaacagcagcagcagcatcaacaacaacagcatcaacAGCAACCACAACAACACATCCATCAGCATGTTGTGCATATTCAACAACAAACCccacatcatcatcaacaacaacatatCCAACAGCAGGATGTTGTCACCTCAACAAGTCAGGTCCACACCCAAGCTGGACAAATCCAACAGATTTATCACCATCATAGCACCCCCGAGAGGAGTTGA
- Protein Sequence
- MPFGLLRTAEQLKIKGLCETAESVDDISEAATVTVSENISQAVVANIVNPVQGNAIVTTHTIANNTNTHTTTANLNNNNNINNSNINAVVAAPTATSTPQLRKSRVRKRSKSPDTNQQQQQQQQQQHQQQQHQHQQQHQQQHQQHHQQQAILSQNLNTAAIVSLQQTSSGNYIPVSGGQTITTTAISQQNSEDSDSDKPTSQKICKTEACNSPTSNNGSVTVQQGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNIYSDASEDSLMIANGSPNDNNEPHYTNLDQPHDKQGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDITNTSASSINNTSGNTSGSIEIIEHSPENSLHMFQQQFQYSPAPQSNHQTQQQQQQQQQQQQQQQQQQQQQQQQHQQQQHQQQPQQHIHQHVVHIQQQTPHHHQQQHIQQQDVVTSTSQVHTQAGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315857;
- 90% Identity
- iTF_00315068;
- 80% Identity
- -