Basic Information

Insect: Cheilosia variabilis
Gene Symbol: -
Assembly: GCA_951230905.1
Location: OX579677.1:64546125-64549041[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00042 0.059 14.7 0.5 1 23 151 174 151 174 0.97

2 12 3.6 5.1e+02 2.3 0.0 3 23 191 210 189 210 0.82

3 12 0.13 18 6.8 3.4 2 23 328 348 327 348 0.97

4 12 9e-05 0.013 16.8 1.4 1 23 354 377 354 377 0.97

5 12 7.3 1e+03 1.3 2.8 2 23 410 431 409 431 0.87

6 12 0.00028 0.039 15.2 1.9 1 23 437 459 437 459 0.95

7 12 1.3e-07 1.8e-05 25.7 0.7 3 23 471 491 469 491 0.97

8 12 8.3e-05 0.012 16.9 3.7 1 23 498 520 498 520 0.98

9 12 1.1e-05 0.0015 19.7 0.7 2 23 526 547 525 547 0.96

10 12 0.00069 0.097 14.0 1.7 1 20 553 572 553 575 0.93

11 12 0.0017 0.24 12.8 0.2 2 19 581 598 580 600 0.95

12 12 1.9e-05 0.0027 18.9 0.3 1 23 607 630 607 630 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00042	0.059	14.7	0.5	1	23	151	174	151	174	0.97
2	12	3.6	5.1e+02	2.3	0.0	3	23	191	210	189	210	0.82
3	12	0.13	18	6.8	3.4	2	23	328	348	327	348	0.97
4	12	9e-05	0.013	16.8	1.4	1	23	354	377	354	377	0.97
5	12	7.3	1e+03	1.3	2.8	2	23	410	431	409	431	0.87
6	12	0.00028	0.039	15.2	1.9	1	23	437	459	437	459	0.95
7	12	1.3e-07	1.8e-05	25.7	0.7	3	23	471	491	469	491	0.97
8	12	8.3e-05	0.012	16.9	3.7	1	23	498	520	498	520	0.98
9	12	1.1e-05	0.0015	19.7	0.7	2	23	526	547	525	547	0.96
10	12	0.00069	0.097	14.0	1.7	1	20	553	572	553	575	0.93
11	12	0.0017	0.24	12.8	0.2	2	19	581	598	580	600	0.95
12	12	1.9e-05	0.0027	18.9	0.3	1	23	607	630	607	630	0.98

Sequence Information

Coding Sequence: ATGTTTGGCGCATTGCCAATATGTAGAGTGTGTTTAAAAACATCACTTGAATACATTGATTTCGATACGCCTTTTGAAGTGGAATCAAGCAAAGAGGTTGAGAACGACCTCACATATCTTGATTGTTTTCTTGCGTGCACCCGCCTCGAAGTTGAAGTGACCGAAAATTGTCCCCAAAGCTTGTGTAGCTCTTGTGGTATGGAATTAAAGATTGCCTATGAATTCCTCCAGAAGGCCGAGACCGCCGATAGGGCGCTTCGTGAATTCGCTGCAAATACAAAGCTTGAGAAACCGGACGAGGAGCAGCAGGAAAACGATAGTATTCAGTTGGATGAACATAATGAGTTATATGACTTTGGAAGTGGGGACATTTGTAGACAGGATGAGATTAATGCTGGCGATAACGAAACTTATGAGCAAATAGAAAGTCAAGTAGAAGAAGAGAAAAGTTATGTGTGTACCATTTGTggtgaacaatttttttcacaattcGTTCTTAACTTACATGTTAAGCGATCACACTGCAACGAAGATATCGATGACGCTAAGACGTCCGTTGAAAAGGTCGAATGTCAAATCTGTGAAGTTGTCATACCATTGGGAAAGTTGAACTCGCACATGCAACTTCACGAGGAAGCAAATAGTTTAGATTTTGAATCCGGCTCTAACTTCGCTGCAAGCAACAACGATGAGCAACTGATAGACGTTGGCGCAGATGCAGAGTTTGAGTTATTAGAAATGACCGGAGAATCCATTGCTGGCGCAAGCCCAATGGGTGACTCACAAgaagacgaagacgaagaagaagaagacgatcCAGCAGCAGCTGAggaatatgagccaaatccCGACGATGAGGAAAAAGACGATGATATGGAACTAAAAATTGAACCAGACTACCCGGTGGATCACAAATTCTCTTTGATAGAAAAAATCTTGACAGACCAAGAGAAAATGCGTGTGACAAAGCCAAATTACAAGCGTTGCAACATCTGCCACCGACACGTGAGAACGGTGTCATTCGAGGCGCACATGAATGTACACAATGATATTCGTCAATTTGCTTGCGAACATTGTCCTGGGGAATTCTTCTCCAAAAGATCGCTTCAAAAGCACATCAAAACTGCGCACAACGACCAGCTAAAATCTGTTTGCCGAATATGTCACGAGACTGTGGAAGGTGTCGATATGAAAACACACATTCAAGAAAAACATTTAAGGACCGTTAAGTGTACTCACTGTGATTACCAGGGACAAGAATTAAAGATGAAGGAGCACATGAAACGACGCCATGCAGAGTCCAGAGACTTCCTATGCAATGTGTGCTCTAAAACCTTTTGTACGCTTGGTGTGCTCAATGCGCATTTGAAGTACCACGAACGCAAGGAATCTAAGGTCAAGTCTGACGCATGCGAAATATGTGGCAAAGTATTTTCAACCAATCACTATCTCAAATCGCATATCCTTACGCATCGGGACGAGCGCGAACTATTCCATTGCAATAATTGCGATAAGTCCTATCATTCGAAAGCCGCCTTGGACAACCACATACGAATGCACAAAGGCGATACAATCAAGTGTGTCCTATGTTCGAAGCAATTTGCAAGGCAATACGAACTTAATGTTCACATGCGTTTCCACACCAAAGAGTATCCTTTCGAATGCGAGCTGTGTCGCAAAAAGTTCGCTATTAAGGGTCACCTAAGGACACACATGTGGCGACACCAAGGCCTTAAGCTGCAGTGCGAAGAATGCGGCAAGCTCTTTACTTCCACTAAAGCACTGCAAGAGCACTCCTTCTGCCATTCTGAGATGCCGTTCCCATGTCCGTACTGCTCGAAAGCCTACCCCTCGAAACCGAAattcAAAGTGCATTTGAAAACCGCTCACATGGTGGAATTTTCAAATGACGAATTGCAGAAAATGAGCAAATTCCCTCTTCAAAAACGATCTAGATCGAAGAAGTTTACGCTAGTTCAAGCTGACACGGTTATGAAAGAGGTTGAAATTCAGTCGAAAGAGGATGAGGAAGAGCGCACACAATAA
Protein Sequence: MFGALPICRVCLKTSLEYIDFDTPFEVESSKEVENDLTYLDCFLACTRLEVEVTENCPQSLCSSCGMELKIAYEFLQKAETADRALREFAANTKLEKPDEEQQENDSIQLDEHNELYDFGSGDICRQDEINAGDNETYEQIESQVEEEKSYVCTICGEQFFSQFVLNLHVKRSHCNEDIDDAKTSVEKVECQICEVVIPLGKLNSHMQLHEEANSLDFESGSNFAASNNDEQLIDVGADAEFELLEMTGESIAGASPMGDSQEDEDEEEEDDPAAAEEYEPNPDDEEKDDDMELKIEPDYPVDHKFSLIEKILTDQEKMRVTKPNYKRCNICHRHVRTVSFEAHMNVHNDIRQFACEHCPGEFFSKRSLQKHIKTAHNDQLKSVCRICHETVEGVDMKTHIQEKHLRTVKCTHCDYQGQELKMKEHMKRRHAESRDFLCNVCSKTFCTLGVLNAHLKYHERKESKVKSDACEICGKVFSTNHYLKSHILTHRDERELFHCNNCDKSYHSKAALDNHIRMHKGDTIKCVLCSKQFARQYELNVHMRFHTKEYPFECELCRKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFCHSEMPFPCPYCSKAYPSKPKFKVHLKTAHMVEFSNDELQKMSKFPLQKRSRSKKFTLVQADTVMKEVEIQSKEDEEERTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00311278; iTF_00313712; iTF_00314611; iTF_00316250; iTF_00312891; iTF_00312062;
90% Identity: iTF_00312062;
80% Identity: -