Cpag005300.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- -
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000017.1:5211299-5214541[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00053 0.048 14.4 0.4 1 23 151 174 151 174 0.97 2 12 2.6 2.3e+02 2.8 0.0 2 23 190 210 189 210 0.86 3 12 0.13 12 6.8 3.4 2 23 326 346 325 346 0.97 4 12 0.0002 0.018 15.7 1.3 1 23 352 375 352 375 0.96 5 12 7.5 6.8e+02 1.3 2.8 2 23 408 429 407 429 0.87 6 12 0.00029 0.026 15.2 1.9 1 23 435 457 435 457 0.95 7 12 6.4e-08 5.8e-06 26.7 1.0 3 23 469 489 467 489 0.97 8 12 2.3e-05 0.002 18.7 1.8 1 23 496 518 496 518 0.98 9 12 1.1e-05 0.00097 19.7 0.7 2 23 524 545 523 545 0.96 10 12 0.00071 0.064 14.0 1.7 1 20 551 570 551 573 0.93 11 12 0.0017 0.16 12.8 0.2 2 19 579 596 578 598 0.95 12 12 2e-05 0.0018 18.9 0.3 1 23 605 628 605 628 0.98
Sequence Information
- Coding Sequence
- ATGTTTGGCGCTTTGCCAATATGTAGAGTATGTTTAAAAACATCACTTGAATATATTGATTTCGATACGCCTTTTGAAGTTGAATCCAGCAAAGAGGTCGAGAACGACCTCACATATCTCGATTGTTTTCTTGCGTGCACCCGCCTCGAAGTTGAACTGACGGAAAACTGTCCCCAAAGTTTGTGCAGCTCATGTGGTATGGAATTAAAGATTGCCTATGAATTCCTCCAGAAAGCAGAGACCGCCGATAGGGCACTTCGTGAATTCGCCGCAAATACAAAGCTTGAGAAACCCGACGAGGAGCAGCAGGACAACGATAGTATTCATTTAGCTGAACATAATGAGTTATATGACTTTGGGAGTGGGGACATTTGTAGACAGGATGATTTCAATGCTGCCGACAACGAAACTTACGAGCCAATAGGAAATCAAATCGAAGAAGAGAAAAGCTATGTGTGCACGATTTGTggtgaacagtttttttcacAATTCGTTCTTAACTTACATGTAAACCGATCACACTGCAGCGAAAATACCGAAGATGTTAAGACGTCTGTTGAGAAAGTCGAATGTCAAATCTGTGAAATTGTCATACCATTGGGGAAGTTGAACTCGCATATGCAACTTCACGAGGAAGCAAATAGTTTAGATTTCGAATCTGGGTCCAACTTTGCTGCCAGCAACAACGATGAACAACTGATAGACGTTGGCGCAGATGCAGAGTTTGAGTTATTAGAAATGACTGGAGAATCAATTGCGGGCGCAAGCCCAATGGGTGATTCGcaagaagacgaagaagaagaagacgatcCAGCAGCAGCGGATGAATATGAACCAAATCCTGATGATGAGGAGAAAGACTATGATACAGATCTAAAAATTGAACCAGACTACCCGATGGATCAAAAATTCTCTTTAATAGAAAAAATCTTGACAGACCAGGAGAAAAAGCGTGTGACAAAGCCAAATTACAAGCGTTGCAACATCTGCCACCGGCACGTGAGAACTGTATCATTTGAGGCGCACATGAATGTACACAATGATATTCGACAATTTGCATGCGATCATTGTCCTGGGGAATTTTTCTCTAAAAGATCACTTCAAAAGCATATCAAAAGTGCCCACAACGAGCATCTAAAATCTGTTTGCCGAATATGCCACGAGACTGTGGAAGGTGTAGATATGAAAACACACATTCAAGAAAAACATTTACGGACCGTCAAGTGTACCCACTGTGATTACCAGGGGCAAGAGCTAAAGATGAAGGAGCACATGAAGCGACGCCATGCAGAGTCCAGAGACTTCTTATGCAATGTGTGCTCTAAAACATTTTGCACGCTTGGTGTGCTAAATGCGCATTTGAAGTACCACGAACGCAAGGAATCTAAGGTCAAGTCTGACGCATGCGAAATATGCGGCAAAGTATTCTCAACCAATCACTATCTCAAATCACATATGCTAACGCATCGGGATGAGCGCGAACTGTTCAATTGCAACAATTGCGACAAGTCCTATCATTCGAAAGCCGCTCTGGACAACCACATACGAATGCACAAAGGCGATACAATCAAGTGTGTCCTATGTTCGAAGCAATTTGCAAGGCAATACGAACTTAATGTTCACATGCGTTTCCACACCAAAGAGTATCCTTTCGAATGCGAGCTGTGTCGCAAAAAGTTCGCCATTAAAGGTCACCTAAGGACACACATGTGGCGTCACCAAGGCCTTAAGCTACAGTGCGAAGAATGTGGCAAGCTCTTTACTTCCACTAAAGCACTGCAAGAGCACTCCTTCTGCCATTCGGAGATGCCGTTCCCATGTCCGTACTGCTCGAAAGCGTACCCTTCGAAACCGAAattcaaAGTGCATTTGAAAACTGCTCACATGGTGGAATTTTCAAATGACGAATTGCAGAAAATGAGCAAATTCCCTATTCCAAAACGATCTAGATCGAAGAAGTTCACGCTAGTTCAAGCAGACACCGTTATGAAAGAGGTTGAAATTCAGTCGAAAGAGGACGAGGAAGAGCGCACACAGTAA
- Protein Sequence
- MFGALPICRVCLKTSLEYIDFDTPFEVESSKEVENDLTYLDCFLACTRLEVELTENCPQSLCSSCGMELKIAYEFLQKAETADRALREFAANTKLEKPDEEQQDNDSIHLAEHNELYDFGSGDICRQDDFNAADNETYEPIGNQIEEEKSYVCTICGEQFFSQFVLNLHVNRSHCSENTEDVKTSVEKVECQICEIVIPLGKLNSHMQLHEEANSLDFESGSNFAASNNDEQLIDVGADAEFELLEMTGESIAGASPMGDSQEDEEEEDDPAAADEYEPNPDDEEKDYDTDLKIEPDYPMDQKFSLIEKILTDQEKKRVTKPNYKRCNICHRHVRTVSFEAHMNVHNDIRQFACDHCPGEFFSKRSLQKHIKSAHNEHLKSVCRICHETVEGVDMKTHIQEKHLRTVKCTHCDYQGQELKMKEHMKRRHAESRDFLCNVCSKTFCTLGVLNAHLKYHERKESKVKSDACEICGKVFSTNHYLKSHMLTHRDERELFNCNNCDKSYHSKAALDNHIRMHKGDTIKCVLCSKQFARQYELNVHMRFHTKEYPFECELCRKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFCHSEMPFPCPYCSKAYPSKPKFKVHLKTAHMVEFSNDELQKMSKFPIPKRSRSKKFTLVQADTVMKEVEIQSKEDEEERTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00315423;
- 90% Identity
- iTF_00314611; iTF_00311278; iTF_00315423;
- 80% Identity
- -