Basic Information

Insect: Cheilosia vernalis
Gene Symbol: -
Assembly: GCA_949126925.1
Location: OX421360.1:65072542-65075759[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.12 15 7.1 3.4 2 23 232 252 231 252 0.97

2 11 8.6e-05 0.011 17.0 1.4 1 23 258 281 258 281 0.97

3 11 3.8 4.8e+02 2.3 0.5 3 23 289 309 288 309 0.90

4 11 6.8 8.6e+02 1.6 2.8 2 23 314 335 313 335 0.88

5 11 0.00026 0.033 15.5 1.9 1 23 341 363 341 363 0.95

6 11 5.8e-08 7.3e-06 26.9 1.0 3 23 375 395 373 395 0.97

7 11 2e-05 0.0026 18.9 1.8 1 23 402 424 402 424 0.98

8 11 9.8e-06 0.0012 19.9 0.7 2 23 430 451 429 451 0.96

9 11 0.00064 0.081 14.2 1.7 1 20 457 476 457 479 0.93

10 11 0.0016 0.2 13.0 0.2 2 19 485 502 484 504 0.95

11 11 1.8e-05 0.0023 19.1 0.3 1 23 511 534 511 534 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.12	15	7.1	3.4	2	23	232	252	231	252	0.97
2	11	8.6e-05	0.011	17.0	1.4	1	23	258	281	258	281	0.97
3	11	3.8	4.8e+02	2.3	0.5	3	23	289	309	288	309	0.90
4	11	6.8	8.6e+02	1.6	2.8	2	23	314	335	313	335	0.88
5	11	0.00026	0.033	15.5	1.9	1	23	341	363	341	363	0.95
6	11	5.8e-08	7.3e-06	26.9	1.0	3	23	375	395	373	395	0.97
7	11	2e-05	0.0026	18.9	1.8	1	23	402	424	402	424	0.98
8	11	9.8e-06	0.0012	19.9	0.7	2	23	430	451	429	451	0.96
9	11	0.00064	0.081	14.2	1.7	1	20	457	476	457	479	0.93
10	11	0.0016	0.2	13.0	0.2	2	19	485	502	484	504	0.95
11	11	1.8e-05	0.0023	19.1	0.3	1	23	511	534	511	534	0.98

Sequence Information

Coding Sequence: ATGTTTGGCGCATTGCCAATATGTAGAGTGTGTTTGAAAACATCACTTGAATACATTGATTTTGATACGCCTTTTGAAGTTGAATCAAGCAAAGAGGTTGAGAACGACCTCACATATCTCGATTGTTTTCTTGCGTGCACCCGCCTCGAAGTTGAAGTGACTGAAAATTGTCCCCAAAGCTTGTGTAGCTCATGTGGTATGGAATTAAAAATTGCCTATGAATTCCTCCAGAAGGCTGAGACCGCCGATAGGGCTCTTCGTGAATTCGCTGCAAATACAAAGCTAGAGAAACCCGACGAGGAGGAGCAGGAAAACGCTAGTATTCAGTTAGATGAACATAATGAATTATATGACTTTGGAAGTGGGGACATTTGTAGACAGGATGAGATCAATGCTGCCGACAACGAAACTTATGAGCAAATAGAAAATCAAGTCGaagaagATGCTGAGTTTGAGTTATTAGAAATGACCGGAGAATCTATTACGGGCGCAAGCCCAATGTGTGACTCACAAGAAGATGAAGACGATCGAGCAGCGGAGGAGGAATATGAGCCAAATCCTGACGATGAGGAGAAAGACGATGATATTGAACTAAAAATCGAGCCAGACTACCCGTTGGATGACAAATTCTCTTTAATAGAAAAAATCTTGACAGACCAAGAGAAAATGCGTGTGACAAAGCCGAATTACAAGCGTTGCAACATCTGCCACCGACACGTGAGAACGGTGTCATTTGAGGCGCACATGAATGTACACAATGATATTCGTCAATTTGCATGCGATCATTGTCCTGGGGAATTTTTCTCCAAAAGATCGCTTCAAAAGCACATCAAAACTGCGCACAACGATCAGCTAAAATCTGCCTGCCGAATATGTCACGAGACTGTGGAAAGTGTCGATATGAAAACACACATTCAAGAAAAACATTTAAGGACCGTTAAGTGTACGCACTGTGACTACCAGGGGCAAGAATTAAAGATGAAGGAGCACATGAAACGACGCCATGCAGAGTCCAGAGACTTCCTATGCAACGTGTGCTCTAAAACCTTTTGTACGCTTGGTGTGCTCAATGCACATTTGAAGTACCACGAACGCAAGGAATCTAAGGTGAAGTCTGACGCATGCGAAATATGTGGCAAAGTATTTTCAACCAATCACTATCTCAAATCACATATGCTTACGCATCGGGACGAGCGCGAACTATTCAATTGCAACAATTGCGATAAGTCCTATCATTCGAAAGCCGCCTTGGATAACCACATACGAATGCACAAAGGCGATACAATCAAGTGTGTATTATGCTCGAAGCAATTTGCAAGGCAATACGAACTTAATGTTCACATGCGTTTCCACACCAAAGAGTATCCTTTCGAATGCGAGCTTTGTCGCAAGAAATTCGCTATTAAGGGCCACCTAAGGACACACATGTGGCGTCACCAAGGCCTTAAGCTGCAGTGCGAAGAATGCGGCAAGCTCTTTACTTCCACTAAAGCACTGCAAGAGCACTCTTTCTGCCATTCTGAGATGCCGTTCCCATGCCCGTACTGCTCGAAAGCGTACCCCTCGAAACCGAAattCAAAGTGCATTTGAAAACTGCTCACATGGTGGAATTTTCAAATGACGAATTGCAGAAAATGAGCAAATTCCCTCTTCCAAAACGATCTAGATCGAAGAAGTTTACGCTAGTTCAAGCTGATACGGTTATGAAAGAGGTTGAAATTCAGTCGAAAGAGGAAGAGGAAGAGCGCAcataa
Protein Sequence: MFGALPICRVCLKTSLEYIDFDTPFEVESSKEVENDLTYLDCFLACTRLEVEVTENCPQSLCSSCGMELKIAYEFLQKAETADRALREFAANTKLEKPDEEEQENASIQLDEHNELYDFGSGDICRQDEINAADNETYEQIENQVEEDAEFELLEMTGESITGASPMCDSQEDEDDRAAEEEYEPNPDDEEKDDDIELKIEPDYPLDDKFSLIEKILTDQEKMRVTKPNYKRCNICHRHVRTVSFEAHMNVHNDIRQFACDHCPGEFFSKRSLQKHIKTAHNDQLKSACRICHETVESVDMKTHIQEKHLRTVKCTHCDYQGQELKMKEHMKRRHAESRDFLCNVCSKTFCTLGVLNAHLKYHERKESKVKSDACEICGKVFSTNHYLKSHMLTHRDERELFNCNNCDKSYHSKAALDNHIRMHKGDTIKCVLCSKQFARQYELNVHMRFHTKEYPFECELCRKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFCHSEMPFPCPYCSKAYPSKPKFKVHLKTAHMVEFSNDELQKMSKFPLPKRSRSKKFTLVQADTVMKEVEIQSKEEEEERT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00315423;
90% Identity: -
80% Identity: -