Cscu025933.1
Basic Information
- Insect
- Cheilosia scutellata
- Gene Symbol
- -
- Assembly
- GCA_955612985.1
- Location
- OY015314.1:43023015-43026438[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.9 2.2e+02 3.4 0.3 2 23 182 204 181 204 0.94 2 17 0.029 3.4 9.1 6.4 2 19 246 263 245 266 0.92 3 17 0.061 7.2 8.0 0.0 3 23 307 328 306 328 0.95 4 17 0.0026 0.3 12.4 1.9 2 23 335 356 334 356 0.96 5 17 0.013 1.5 10.2 2.7 1 23 362 385 362 385 0.97 6 17 3.4e-05 0.0039 18.3 1.3 1 23 391 414 391 414 0.97 7 17 0.0022 0.26 12.6 0.2 1 23 461 483 461 483 0.97 8 17 0.0032 0.38 12.1 1.5 1 23 488 510 488 510 0.98 9 17 0.1 12 7.4 0.2 1 23 526 550 526 550 0.97 10 17 8.9e-07 0.0001 23.3 1.7 1 23 556 578 556 578 0.98 11 17 0.0025 0.3 12.4 0.7 1 23 584 607 584 607 0.95 12 17 0.0033 0.39 12.0 0.2 2 23 613 635 612 635 0.96 13 17 2.6e-06 0.00031 21.8 0.7 2 23 639 661 638 661 0.96 14 17 3.3e-05 0.0038 18.3 0.2 1 23 667 690 667 690 0.95 15 17 0.0056 0.65 11.3 1.8 1 23 696 718 696 718 0.97 16 17 0.00022 0.026 15.7 5.6 1 23 724 746 724 746 0.98 17 17 0.0014 0.17 13.2 0.1 1 23 752 777 752 777 0.94
Sequence Information
- Coding Sequence
- ATGTCCATAGAGTGTTTACGATGTAGAACCCCTTTAAGTAAGGATTGCCAGTTGATCTTTGATGAAACTGGCATCGAACTGCAACTGGACAAACTTCTCATTGAGCACTTTGGAATTTACATCGAGAAAGATGACTGCACAACGCAGGCTCTTTGTGAAGAATGTGTAAATGAACTAATTGAACTGTACGATATAACACAGCGAGATCAGGAGCTACAATCTGCTGCAAACGAAATAAGCAATGGCAGTGAATCACAAGAATTCAAAGAAGAAGTTGAACTTATTATTGAAGAAACGGAAGTCGATTTGGAAAATGAAGAGGTTAACGAAAATACACTCGAACCTGAACCAGAGTATGAAGAGGTGGAATTGGAAAATGAATTGGTCGCAGTAGAAAATAACGAAGAGTTCTTCGAATTTGAAAATGAAGTAAATCTCGGTAACAATCAGTGTCTGGATGAATTGGAAGGTATCACCACACAACAGTACTGTCAAAAAGTCATCAAAAGTGAACTGGAAGAAGTCGACTGTGATCAAACTACTGTGTGCAGGTTATGCGAGGAAGTCTTGAAAACTCACACTGCTGTAATGATGCATGTAGCGACAAACCATGAAACTGATACCAAACAGTACCCATGCATTATATGCAACGTGGAGTGTTTTGATTCAATGAAAGATCTAGCACATCACACCGTACTGAAGCATTACGATCTGGAGGCGATCACTATTTACTGCATTTGTCCTGAGTGCGATAAAAGATTTTCAAACTTTACTCTATTCAATAAACATTCGTGCCACAAGGCAAGCACAGGAAGTCGCCTATTACAGGAGTGTTTTGAATGTTCACGGCATTTTAACTCGAATAAGAGATATCGTTTCCACTTGCAATTCCATTTAGAGAAACGAAGACCAAAAGCTTGCTTTATCTGTGACATTCTATTTTCCGATGAAAACGATTTCTACGAGCACATAATGTACGCGCACGAGAAGAAGGACAAGCTGATATGCAAAAAATGCGATCGAATTTGTTCAACGCAACAATTGTACGACAACCATATCAAAGTACACGACGCTGTTCGAACTTTCTATTGCGAATATTGCACCAGATCGTATTTATACAAGCAAATGTTGATGAATCACATAaAACGGCAACATACAGAACAAGACTGCTACCAGTGCACTATCTGCAAAAAATCTCTAGCCAATAAGCATGTCCTAGCGAGGCACATGAAATTAATACATAACGAAGAGACAAATGAAAGTGTTTACATGTGTTCGGCGTGTGGTCTTCTTGCAGCTTCTAATGACGACATAAAgGAACATTTTAAGGAAAATATCTGTCCAGATGCAAAACTCACTACACAGTGCTTGGCGGTGGCGTTTGCTTGTGAATTTTGTGAACAAGCCTATAACAGTgtggaaaatttgaatttgcatCGCAAAATTCACGTAAAAAAGCGCTACTCCTGTTGGATCTGTAAAACGGATTATACAGAATTCAAGAAACTGAAAACTCACATCCTCACGCACAATAATGTTGAGCCATTACAGGATACGTTCCCTATCAACAGGCATTACGTATGTGATTTTAATttgtgcGACCAAACCTATCTAACATGGCCATCGCTAAGCGCTCACAAAATGCGCCACTCAATCAATGCCAAGTTTACTTGTGAAATTTGCAATCAAACATTCAGGACAAAAACGCTTTTAAACAACCACCAAAGAGGCCACGATAACAACGATCAATTCCCTTGTCAGTTTTGCCCGAAAATATGCTCTTCGCAAATGTCTCTAGCGGTTCATGTCGCACGAAAGCATAACAACAATTGCAAAACATGCCCAACCTGCAATTCAACGTATGCCACCGAAGAAGCACTTAAGGATCACATCGAAAAATACCACGTCGAATTGGAATGTAAGCAGTGCGGTAAAATCACGAAAAACAAGCGAAATCTTGAGACACACATACGAATGGTTCATGCCAATGTGAAGAGGTATTTCTGTCCGACATGCAATAAGGGCTACTACAACAAAGGCGATCTAAAGGTTCATGTGAGAGCGGCTCACTCGGACCAGCACAAGTTTAAATGTCAGCACTGTGATTTTATGACGAGCTACGAGGCATCGTACAATGCTCACCTTCTACTGCATGAATCTAAAAAGCCATTCAAATGTGACATATGCTCGAAAGAGTTCACCAGGAAAACATGCTTCAAACTGCATCTACTGAGGCATGCGGATGTTAAACCGTTTGCTTGTCCGGTTGAAGATTGCGATAGGAGCTTTGTAACCAGAGGGATTCTTAATACACACCTGCGTGACAGTCATCCAGAGTCCGAAGGCAAAGTCAAAAGAGCATCACCACGAGCTGTAAAGCGAAGTCGGCAAAAAGCCGCCGAACCTGTACGCAGCACTAAGTCTAGGAAATACGTTATCGCCGATGAGAGTTCAGGCAGTATTCCCTTAGAACTTGACGATGTCGAAGGTGGTATGATTTTTTATGATGCATCAAATACAGATCAGGAAATTGTACTCGAATGCATTGAAGAGGATAATGATTTGATTGAGGATTTAAATCAATGTGATGTTGTTAATTAG
- Protein Sequence
- MSIECLRCRTPLSKDCQLIFDETGIELQLDKLLIEHFGIYIEKDDCTTQALCEECVNELIELYDITQRDQELQSAANEISNGSESQEFKEEVELIIEETEVDLENEEVNENTLEPEPEYEEVELENELVAVENNEEFFEFENEVNLGNNQCLDELEGITTQQYCQKVIKSELEEVDCDQTTVCRLCEEVLKTHTAVMMHVATNHETDTKQYPCIICNVECFDSMKDLAHHTVLKHYDLEAITIYCICPECDKRFSNFTLFNKHSCHKASTGSRLLQECFECSRHFNSNKRYRFHLQFHLEKRRPKACFICDILFSDENDFYEHIMYAHEKKDKLICKKCDRICSTQQLYDNHIKVHDAVRTFYCEYCTRSYLYKQMLMNHIKRQHTEQDCYQCTICKKSLANKHVLARHMKLIHNEETNESVYMCSACGLLAASNDDIKEHFKENICPDAKLTTQCLAVAFACEFCEQAYNSVENLNLHRKIHVKKRYSCWICKTDYTEFKKLKTHILTHNNVEPLQDTFPINRHYVCDFNLCDQTYLTWPSLSAHKMRHSINAKFTCEICNQTFRTKTLLNNHQRGHDNNDQFPCQFCPKICSSQMSLAVHVARKHNNNCKTCPTCNSTYATEEALKDHIEKYHVELECKQCGKITKNKRNLETHIRMVHANVKRYFCPTCNKGYYNKGDLKVHVRAAHSDQHKFKCQHCDFMTSYEASYNAHLLLHESKKPFKCDICSKEFTRKTCFKLHLLRHADVKPFACPVEDCDRSFVTRGILNTHLRDSHPESEGKVKRASPRAVKRSRQKAAEPVRSTKSRKYVIADESSGSIPLELDDVEGGMIFYDASNTDQEIVLECIEEDNDLIEDLNQCDVVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00313692; iTF_00311240; iTF_00316197; iTF_00314572; iTF_00315380; iTF_00312021;
- 90% Identity
- iTF_00313692;
- 80% Identity
- -