Cgro019574.1
Basic Information
- Insect
- Cheilosia grossa
- Gene Symbol
- -
- Assembly
- GCA_963082955.1
- Location
- OY720148.1:33553651-33556946[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.75 74 4.5 0.3 2 23 186 208 185 208 0.95 2 19 0.0078 0.77 10.7 6.1 2 19 250 267 249 270 0.92 3 19 5.6 5.5e+02 1.7 2.9 2 23 281 302 280 302 0.87 4 19 0.056 5.5 8.0 0.0 3 23 311 332 310 332 0.95 5 19 0.0005 0.049 14.5 1.3 2 23 339 360 338 360 0.96 6 19 0.0084 0.82 10.6 3.0 1 23 366 389 366 389 0.97 7 19 7.2e-05 0.0071 17.1 1.3 1 23 395 418 395 418 0.97 8 19 0.22 22 6.1 0.0 1 20 427 446 427 447 0.93 9 19 0.0054 0.53 11.2 0.7 1 23 465 487 465 487 0.96 10 19 0.0008 0.079 13.8 1.1 1 23 492 514 492 514 0.98 11 19 0.22 21 6.2 0.3 1 23 530 554 530 554 0.96 12 19 4e-07 3.9e-05 24.2 1.1 1 23 560 582 560 582 0.98 13 19 0.012 1.2 10.1 2.2 1 23 588 611 588 611 0.95 14 19 0.0061 0.6 11.1 0.2 2 23 617 639 616 639 0.95 15 19 5.1e-06 0.00051 20.7 0.5 2 23 643 665 642 665 0.97 16 19 0.00021 0.021 15.6 0.6 1 23 671 694 671 694 0.95 17 19 0.003 0.29 12.0 2.1 1 23 700 722 700 722 0.97 18 19 0.0002 0.02 15.7 5.6 1 23 728 750 728 750 0.98 19 19 0.0046 0.45 11.4 0.1 1 23 756 781 756 781 0.94
Sequence Information
- Coding Sequence
- ATGTCCGTAGAATGCTTACGCTGTAAAGCGCCTTTAAGTAAGGACTGCCAGTTAATCTTTGACGAAACTGGCATCGAATTGCAACTGGACAAGCTTCTCGTCGAGCACTTTGAAATTCTCATCGAGAAGGATGACTGCACAACGCAGGCTCTTTGTGAAGAATGTGTCAATAAACTAATTGAACTGTACGATATAACACAGCGAAATCAAGAACTCGAATCTGCTGCAAACGAAACTAGTAATGCTGGTGAAGAAGAGACCCAGGAATTTAAAGAAGAAGTGGAGCTCATTATTGAAGAAGCAgaagttgattttgaaaatgaagatgAAAATCTTGACGAAAATACATCGGAACCTGACCAGGAGTGCGAACAAGTAGACATGAAAAATCAATTGGTCGTAGTTGAGAATAACGAAGAGTTCTTCGAATTTGATACTGAAGTAAGTCTTGGTAACATTCAAACCCTGGATGAATTGGAAGGTATCACCACACAACAGTATTGTCAAAAGGCCATCAAAAGTGAACTGGAAGAAATCGACTTTGATCAAAAAACTGTTTGCAGGctATGCGAGGAAGTCTTGAAGAGTCACACAGCTGTTATGATGCATATTGCAACAAATCATGAAACTGACTCCAAACAGTATCCGTGCATTATATGCAATGTGGATTGTTTATATTCAATTAAAGATTTAGCACATCACATTGTGTTGAAGCATTACGATCTGGAGGCGATCACCATTTATTGCATTTGTCCTGAATGTgataagcgtttttcaaatttttctttgTACAATAAACATTCGTGCCACAAGGCAAGCACAGGAAATCGGCTCTTGCAGGAGTGTTTCGAATGCTCAAGGCAGTTTAATTCAAATAAGAGATACCGTTTTCACTTGCAATTCCATCTAGAGAAACGAAGACCAAAAGCTTGCTTCATCTGTGACATTCTATTTTCCGATGAAAACGATTTCTACGAGCACATAATGTACGCCCACGAGAAGAAGGACAAACTGATATGCAAAAAGTGCGATCGAGTTTGTTCGTCACAAGAACTGTACGATAACCATATAAAAGTGCACGATGCTGTTCGCACTTTCTATTGCGAATATTGCACCAGATCGTATTTATACAAGCAAATGTTGACGAATCACATAaaaAGGCAACATACCGAACAAGACTGCTACCAATGCACAGTATGCAAAAAATCTCTAGCGAGTAAGCATGTCCTAGCGAGGCACATGAAATTAATACATAACGAAGAGACAGAGGAAAGTGTTTACAAGTGTTCCACGTGTGGTCTTGTTGCAgcttctaaaaacaaaataaagGAACATATTGGAGAAAATATCTGTTCGGATGCAAAACTCACTACAAAGTGCTTGACAGTGGCGTTCGCTTGTGAATTTTGCGAACAAGCCTATTGCAGTGTGGAGAATTTGAAATTGCATCGCGAGATTCACGTGAAAAAACGCTACTCCTGTTGGATATGTAAAACTGCTTATTCAGAATTCAAGAAATTGAAAACCCATATCCTAACGCACAATAATGTTGAGCCACTTCAAAATACGTTCCCTATCAACAGGCATTACGTATGTGATTTTAACcTCTGCAACCAAACGTATCTAACATGGCCATCACTAAGCGCCCACAAATTGCGGCATTGTATCAATGCCAAGTTTACTTGTGAGATTTGCGATCAAACATTCAGAACGCAAACGCTTTTGAACAACCACCAAAGAGGCCACGATAACAACGATCAATTCCCTTGCCAATTTTGCCCGAAAATCTGTTGTTCGCAAATGTCCCTAGCGGTTCATGTCGCAAGAAAGCATAACAACAATTGTAAAACATGTCCCACCTGCAATTCGACATATCCCACCGAAGAAGCGCTTACGGATCACATAGACAAATACCACGTCGAGGTGGAATGTAATCAGTGCGGTAAAGTcacgaaaaacaaacgaaacctTGATACACACATACGAATGGTTCATGCGAATGTGAAACGATATTTCTGTTCGACATGCAACAAGGGCTACTACAATAAGGGCGACCTAAAGATCCATGAGAGAGCGGTTCACTCGGACCAGCACAAGTTTAAATGCCAGCACTGCGATTTCACGACAAGCTACGAGGCGTCATACAATGCTCACCTTCTGCTGCATGAATCTAAAAAGCCATTCAAATGTGACATATGTTCAAAAGAGTTCACCCGGAAGACTTGCTTCAAACTGCATCTGCTGAGACATTCGGATGTCAAACCGTTTGCTTGCCCAGTTGAAGATTGCGAGAGGAGCTTTGTTACGAGGGGGATTCTTAATACACATTTGCGTGACAGTCATCCGGAGGCCGAAAGCATAGTTAAAAGAGCATCTCCACGGCCTGTAAAGCGAAAACGACAAAAAGCTGCCCAACCTATACGCAACACTAAGCCGAGGAAGTACGTTATCGTTGACGAGAGCTCGGGCAGTGCTCCCTTAGAACTCGACGATGAAGAAGGGGGTATTGTTTTTTACGATGCATCAAATGCCGATCAGGAAATAGTTCTTGAGTGCATCGAAGAGGACAATGATTTTATTGATGACTTGAATCACTGTGATGTTGTTAATTAG
- Protein Sequence
- MSVECLRCKAPLSKDCQLIFDETGIELQLDKLLVEHFEILIEKDDCTTQALCEECVNKLIELYDITQRNQELESAANETSNAGEEETQEFKEEVELIIEEAEVDFENEDENLDENTSEPDQECEQVDMKNQLVVVENNEEFFEFDTEVSLGNIQTLDELEGITTQQYCQKAIKSELEEIDFDQKTVCRLCEEVLKSHTAVMMHIATNHETDSKQYPCIICNVDCLYSIKDLAHHIVLKHYDLEAITIYCICPECDKRFSNFSLYNKHSCHKASTGNRLLQECFECSRQFNSNKRYRFHLQFHLEKRRPKACFICDILFSDENDFYEHIMYAHEKKDKLICKKCDRVCSSQELYDNHIKVHDAVRTFYCEYCTRSYLYKQMLTNHIKRQHTEQDCYQCTVCKKSLASKHVLARHMKLIHNEETEESVYKCSTCGLVAASKNKIKEHIGENICSDAKLTTKCLTVAFACEFCEQAYCSVENLKLHREIHVKKRYSCWICKTAYSEFKKLKTHILTHNNVEPLQNTFPINRHYVCDFNLCNQTYLTWPSLSAHKLRHCINAKFTCEICDQTFRTQTLLNNHQRGHDNNDQFPCQFCPKICCSQMSLAVHVARKHNNNCKTCPTCNSTYPTEEALTDHIDKYHVEVECNQCGKVTKNKRNLDTHIRMVHANVKRYFCSTCNKGYYNKGDLKIHERAVHSDQHKFKCQHCDFTTSYEASYNAHLLLHESKKPFKCDICSKEFTRKTCFKLHLLRHSDVKPFACPVEDCERSFVTRGILNTHLRDSHPEAESIVKRASPRPVKRKRQKAAQPIRNTKPRKYVIVDESSGSAPLELDDEEGGIVFYDASNADQEIVLECIEEDNDFIDDLNHCDVVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312864;
- 90% Identity
- iTF_00314572;
- 80% Identity
- -