Cpag009600.1
Basic Information
- Insect
- Cheilosia pagana
- Gene Symbol
- -
- Assembly
- GCA_936435595.1
- Location
- CAKZFE010000030.1:11143498-11146747[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.4 2.1e+02 2.9 0.3 2 23 187 209 186 209 0.94 2 19 0.02 1.8 9.4 5.5 2 19 251 268 250 272 0.92 3 19 1.9 1.7e+02 3.2 2.2 2 23 282 303 281 303 0.87 4 19 0.18 17 6.4 0.0 3 23 312 333 311 333 0.95 5 19 0.0023 0.21 12.4 1.9 2 23 340 361 339 361 0.96 6 19 0.0083 0.75 10.6 3.0 1 23 367 390 367 390 0.97 7 19 6.4e-05 0.0058 17.3 0.9 1 23 396 419 396 419 0.97 8 19 0.35 31 5.5 0.0 1 20 428 447 428 448 0.92 9 19 0.0009 0.081 13.7 0.2 1 23 466 488 466 488 0.97 10 19 0.00052 0.047 14.4 1.2 1 23 493 515 493 515 0.98 11 19 0.091 8.1 7.4 0.2 1 23 531 555 531 555 0.97 12 19 4e-07 3.6e-05 24.2 1.1 1 23 561 583 561 583 0.98 13 19 0.012 1.1 10.1 2.2 1 23 589 612 589 612 0.95 14 19 0.003 0.27 12.0 0.2 2 23 618 640 617 640 0.96 15 19 1.4e-05 0.0012 19.4 0.7 2 23 644 666 643 666 0.96 16 19 5.6e-05 0.0051 17.4 0.2 1 23 672 695 672 695 0.95 17 19 0.003 0.27 12.0 2.1 1 23 701 723 701 723 0.97 18 19 0.0002 0.018 15.7 5.6 1 23 729 751 729 751 0.98 19 19 0.0013 0.12 13.2 0.1 1 23 757 782 757 782 0.94
Sequence Information
- Coding Sequence
- ATGTCCATAGAGTGCTTACGATGTAAGGCCCCTTTAAGTAAGGATTGCCAATTAATCTTTGATGAAACTGGCATCGAATTGCAACTGGACAAACTTCTAGTTGAGCACTTTGGAATTCGCATCCAGAAGGATGACTGCACAACGCAGGCTCTTTGTGAAGAATGTGTCAATAAACTAATTGAACTGTACGATATAACACAGCGAAATCAAGAACTCCAATCTGCTGCAAACGACGAAAATAGTATTGCTAGTGAAGAAGAGGCCCAGGAATTCAAAGAAGAAGTGGAACTCATTGTTGAAGAAGCGGACGTTGATTCTgaaaatgaagatgaagatgttGTTGGAAATGCATTGGAGCCTGACCAGGAGTCCGAAGAAGCAGACATGGAAAACCAGTTGGTCGTAGTTGAAAATAACGAAGAATTCTTCGAATTTGACAACGAAGTGAGTCTCGGTAAAATTCAAACTCTGGATGAATTAGGAGGTATCACCACAAAAGAGTATTGTCAAAAAGCCATCAAAAGCGAACTGGAAGAAATCGACTTCAATCAAACCACTGTGTGCAGGTTATGCGAGGAAGTCTTGAAGAGTCACACTGCTGTTATGATGCATGTTGCGACAAATCATGAAACTGATTCCAAACAGTATCCGTGCATTATATGCAATGTAGAGTGTTTCCATTCAGTTAAAGATCTAGCACATCACATTGTACTCAAGCATTACGATCTGGAGGCGATCACCATTTATTGCATTTGTCCTGAATGTGATAagagattttcaaattttgctcTGTACAATAAACATTCGTGCCACAAGGCCACCACAGGAAATCGACTGTTGCAGGAGTGTGTTGAATGCTCAAAGCAGTTCAACTCAAATAAGAGATATCGATTCCACTTGCAATTCCATCTTGAGAAACGAAGACCAAAGGCGTGCTTCATCTGTGACATTCTATTTCCCGATGAAAACGATTTCTACGAGCACATAATGTACGCGCACGAGAAGAAAGACAAACTGATATGCAAAAAGTGCGATAGGATTTGTTCGACGCAGCAATTGTACGACAACCATATAAAAGTCCACGACGCTGTTCGTACTTTCTACTGCGAATATTGCACCAGGTCGTATTTATACAAGCAAATGTTGACGAATCACATAaAACGTCAACACACCGAAAAAGACTGCTACCGATGCACTATCTGCGAAAAGTCGCTAGCGAGTAAGCATGTCCTAGCGAGGCACATGAAATTAATACATAACGAAGAGACCGaggaaaatgtttacaaatgttCCACGTGTGGTCTTGTTGCAGGTTCTAAGAACGACATAAAGGAACATATTGGCGAAAATATGTGTTCAGATGGAGAGCTCACTACCGAGTGCTTGACGGTGGCGTTTGCGTGTGAATTTTGCGAACAAGCTTATTCCAGTGTGGAGAATTTGAATTTGCATCGCAAAATTCACGTGAAAAAGCGCTACTCCTGTTGGATATGTAAAACGGTTTACTCTGAATTCAAGAAACTGAAAACCCATATCCTTACGCACAATAATGTTGAGCCACTACAAGAAACGTTCCCTGTCAACAGGCACTACGTATGCGATTTCAATTTGTGCGACCAAACCTATCTAACATGGCCATCACTAAGCGCCCACAAAATGCGGCATACTATCAACGCCAAGTTTACTTGTGAGATTTGCGATCAAACATTCAGAACACAAACGCTTTTGAACAACCACCAAAGAGGCCACGACAATAACGATCAATTCCCTTGCCAATTTTGCCCGAAAATCTGCTGTTCGCAAATGTCTCTGGCGGTTCATGTGGCCCGAAAGCATAACAACAATTGTAAAACGTGTCCAACCTGCAATTCGACATATGCCACCGAAGAAGCGCTCAAGGATCACATTGAAAAAAACCACGTCGAATTGGAGTGTAAGCAGTGCGGTAAAATCACGAAAAACAAACGAAACCTTGATACACACATACGAATGATTCATGCGAATGTTAAACGCTTTTTCTGTCCGACATGCAACAAGGGCTATTACAATAATGGCGACCTAAAGGTCCATGTGAGAGCGGCTCACTCGGACCAGCACAAGTTCAAATGCCAGCATTGCGATTTCACGACAAGCTACGAGGCATCATACAATGCCCACCTTCTCCTGCATGAATCTAAAAAGCCATTCAAGTGTGACATATGTTCAAAAGAGTTTACCCGAAAGACTTGCTTCAAGCTGCATCTGCTGCGACATGCGGACGTCAAACCGTTTGCGTGTCCAGTTGAGGATTGCGACAGGAGCTTTGTAACGAGAGGGATTCTCAATACACATTTGCGTGACAGTCATCCGGAATCCGAGAGCAAAGTCAAAAGAGCATCACCTCGGCCTGTAAAGCGAAAGCGGCAAAAAGCTGCCCAACCTGTGCGCAGCATTAAGCCGAGGAAATACCTCATCGTCGACGAGAGCTCGAGCAGTGCTCCTTTAGAACTCGACGATGAAGAAGGCGGTATGATTTTGTATGATGCATCAAATACAGATCAGGAAATAGTACTTGAATGCATCGATGAGGATAACGATTTGATTGAAGATCTCAATCAGTGTGATGTTGTTAATTAG
- Protein Sequence
- MSIECLRCKAPLSKDCQLIFDETGIELQLDKLLVEHFGIRIQKDDCTTQALCEECVNKLIELYDITQRNQELQSAANDENSIASEEEAQEFKEEVELIVEEADVDSENEDEDVVGNALEPDQESEEADMENQLVVVENNEEFFEFDNEVSLGKIQTLDELGGITTKEYCQKAIKSELEEIDFNQTTVCRLCEEVLKSHTAVMMHVATNHETDSKQYPCIICNVECFHSVKDLAHHIVLKHYDLEAITIYCICPECDKRFSNFALYNKHSCHKATTGNRLLQECVECSKQFNSNKRYRFHLQFHLEKRRPKACFICDILFPDENDFYEHIMYAHEKKDKLICKKCDRICSTQQLYDNHIKVHDAVRTFYCEYCTRSYLYKQMLTNHIKRQHTEKDCYRCTICEKSLASKHVLARHMKLIHNEETEENVYKCSTCGLVAGSKNDIKEHIGENMCSDGELTTECLTVAFACEFCEQAYSSVENLNLHRKIHVKKRYSCWICKTVYSEFKKLKTHILTHNNVEPLQETFPVNRHYVCDFNLCDQTYLTWPSLSAHKMRHTINAKFTCEICDQTFRTQTLLNNHQRGHDNNDQFPCQFCPKICCSQMSLAVHVARKHNNNCKTCPTCNSTYATEEALKDHIEKNHVELECKQCGKITKNKRNLDTHIRMIHANVKRFFCPTCNKGYYNNGDLKVHVRAAHSDQHKFKCQHCDFTTSYEASYNAHLLLHESKKPFKCDICSKEFTRKTCFKLHLLRHADVKPFACPVEDCDRSFVTRGILNTHLRDSHPESESKVKRASPRPVKRKRQKAAQPVRSIKPRKYLIVDESSSSAPLELDDEEGGMILYDASNTDQEIVLECIDEDNDLIEDLNQCDVVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00312864;
- 90% Identity
- -
- 80% Identity
- -