Cnem003783.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- stc
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:61269729-61272905[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 1.9e+04 -4.0 1.6 15 19 326 330 325 330 0.81 2 13 0.054 5.4e+02 0.9 0.2 4 10 359 365 358 366 0.95 3 13 5.5e-07 0.0054 16.9 15.1 1 19 371 388 371 388 0.93 4 13 2 2e+04 -4.6 1.4 6 10 414 418 413 418 0.87 5 13 1.1e-06 0.011 15.9 13.7 3 18 426 441 424 442 0.91 6 13 0.76 7.5e+03 -2.8 1.4 8 13 447 452 446 453 0.79 7 13 0.00011 1.1 9.5 20.7 1 19 482 500 472 500 0.85 8 13 5.6e-05 0.55 10.4 16.3 4 18 548 562 541 563 0.86 9 13 0.045 4.4e+02 1.2 12.3 1 11 603 613 603 625 0.91 10 13 9.6e-10 9.5e-06 25.7 14.2 1 18 630 647 630 648 0.97 11 13 2 2e+04 -10.0 14.8 9 18 694 704 681 705 0.70 12 13 5.3e-09 5.3e-05 23.3 11.9 1 16 741 756 741 763 0.87 13 13 5.7e-07 0.0056 16.8 10.7 1 18 773 791 773 792 0.89
Sequence Information
- Coding Sequence
- atgtcgGACGCTTTCCATCGTTACCATGACGGAGCAGGAGGCAGTGGTACCAGCAGCAACAATAATTATGTAAACTTTAACCAGTTCATGATGCAGCACAACATTATCGGTGGGGTTGGAGGTGGCAGCAGTGGTGCGAGTGGAGACGGAGGAGTTGAGGCGGTGACCCCCTCATCGACGAATCCATTCCATTATAACGGTGACTACCGTCAACAGTATCAGATGGATGACTACTACTTCGGAGACGGAGCTGGTGGAGCATTGTCCATGTATAACTATCAACCTCGGTATAATTACTCAAACACGCAACTACAAGCAAGTGCAGCTGAATTTATTCCAAGGTTCTCAAACTTGTCTTTGGACGAAGTGTTGGGTGCTGTTAGAAGGAATGACGTGACATCTGCACCGACACCCGTCTCGGCTGATATACAAAACGCCAACACAAATGGGTTAAGTGTTCAATCCACAAGCAAGGAGGACTCGCCGCCGAATAAATCTCCTCCGCAGCGGTACACAGGTGCGACGGGAAGAAATCGGGAGTCGACATCACGAGGTGGTGTTGGCACTGGAGGAGCAGCTTCCTCACGGCGTCAAAATGGTCGAGACTATCACCGCAATCAGAGGTACGATAATCACCGGAGCAACAAGCGCAGGGACGACTGGAACAGGAATCGTGATCGTGTGAACGCCTTTAGGGAGGAGAAGTATACCGCCCTGGAGAATGGCAAGGACATCAGTCCACTGAACTCGCCAGAGAAGAAATCTCCCAAGAAGCCGCACCCGGAGAACGAAAAACTGTCGCAGAGGGAGAAACTCATTCGAGAGATTGAGGCACGCCGTCTGGAGTGCCTAGTATGTGTGGAGGCAATCAAGAGCCACAACTCTGTGTGGTCGTGTCACAATTGCTACCATATATTGCATCTGAGCTGTATCATTAAATGGGCATCTAGTTCGAAATCTCAGGATGGATGGCGTTGTCCCGCTTGTCAAAATGTTGAGAAAGACGTTCCAAGGGACTATTACTGCTTTTGCGGCAAGGTGAAGAGCCCGCAATTCAATCGGAATGACATCGCACACAGCTGTGGCGAAGTGTGTGGTCGTATAGAGGGGTGCTCCCATGCCTGCACCTTACTTTGTCATCCGGGACCATGCCCGCCTTGTCAAGCTAACGTGACACGAGAATGTGGTTGCGGTAAGACAACCAAGACTATGCAGTGCTATTTGAAGGAATCCATCGAATGTGAAGCCAAGTGTCAGAAGTTGCTCAATTGTGAGCTGCACGAATGTGAGGAGAAGTGCCACGAGGGCAAGTGTAAACCCTGTGAACAAAAGGTAGACCAGAAGTGTCATTGCGGCAAGCAGGATCGTCAGGTCGCGTGCACAAGAGATTCCCATGAGAAGAAGACCTATTCGTGTGGAAAACCCTGTGGCAGGGATCTAACCTGCGAGAACCACAAGTGTAAGGACTGTTGTCATGCTGGTGAATGCCGGCCATGCAAACTAAGCCCCGAAGTTGTCACCTCTTGTCCGTGTGGCAAAATGCCGGTCGTGCTGGAGCAGAGAAAATCGTGTGTAGATCCGATTCCCGTCTGCGACGGCATTTGCAACAAGACACTACGCTGTGGAAAAGCGGCGCACCCGCATCACTGTACAAGTAAATGCCACTTGGGTAATTGTCCGCCatgcaacaaacaaacagcAGTTAAATGCAGATGTGGGCACATGGATCAGATGATAAAATGCCGTCAGTTGTCAACCAGAGCTGACGATGCACGCTGCAAGAAGCGCTGCGTAAAGAAACGCTCATGTGGCAAACATAAATGCAACCAAGAGTGCTGCATAGACATTGACCACATCTGCCCAATGCCCTGTAATTATACTCTTTCGTGTGGTAAGCACAAGTGCGATCAACCATGCCATCGGGGCAATTGTCCTTCATGCTACCGTAGCTCATTTGAGGAGTTATACTGTGAGTGCGGAGCTGAGGTGATTTATCCACCGGTGCCATGTGGTACAAAGAGACCGGCCTGCAAGAGACCATGTTCGCGTCAACATCCTTGTGAGCATCCTGTTCAGCACAATTGCCACTCGGCCGCTAATTGTCCGCCATGTATGATGTTTACTACTAAATGGTGCTTTGGACAGCACGAACAGAGGAAAACCATTCCATGCAGCCAGGAGAGCTTCAGTTGCGGCCTGGCGTGCAACAAGCCACTCACCTGTGGCCGTCATAAGTGCATCAAGCCTTGTCATGAGGGCCCATGTCAGGCTGTTGGCGAAGTTTGCAAGCAGAATTGCACTACAGTGCGCGGAGGATGTGGGCACAAATGTATGGCAGCTTGTCATGATGGAGACTGTCCCGAAACGGCCTGCAAAGAAATGGTGGAAGTAACCTGTGAATGTGGAAATCGAAAGCAAATGCGTGCTTGCTACGATTTTGCTCGCGAATACCGCAGAATTGCTACAGCACAGTTGGCTTCCTCTATGGCTGAGGTTCAACGCGGCAACACAATCGAGTTAAGCGACATCCTGGGACCAGTAAagatgaacaacaacaaagcCCTTGAATGCAACGATGAATGCCGAACATTGGAACGTAATCGCCGACTTGCAATTGGTCTGCAAATTCGTAATCCCGATCTGCCACAGAAGCTACTTACCAAATATTCCGATTTTATTCGAGGTTACGCAAAGAAGGACCCGACCCTTGTAAAAACCATTCATGACTCACTCACCAACCTCGTTAAACTGGCCAAGGAGAGCAAACAAAAGTCCAGGAGTCATTCGTTCCCAACAATGAACCGCGAGAAACGTCAACTGGTGCATGAGATGTGTGAAATGTTTGGAGTCGAGTCAGTGGCTTACGATGCGGAACCTAATCGGAATGTTGTTGCAACAGCTTACAAGGAGAAGTCGTGGTTACCAGCGCAAAGTATCATGGAAGTCATGCAACGCGAAAGTGGACAACGTCGCGTTCCTGTGCCAAGCAACAATGCATGGGGCATCAAGAGATAG
- Protein Sequence
- MSDAFHRYHDGAGGSGTSSNNNYVNFNQFMMQHNIIGGVGGGSSGASGDGGVEAVTPSSTNPFHYNGDYRQQYQMDDYYFGDGAGGALSMYNYQPRYNYSNTQLQASAAEFIPRFSNLSLDEVLGAVRRNDVTSAPTPVSADIQNANTNGLSVQSTSKEDSPPNKSPPQRYTGATGRNRESTSRGGVGTGGAASSRRQNGRDYHRNQRYDNHRSNKRRDDWNRNRDRVNAFREEKYTALENGKDISPLNSPEKKSPKKPHPENEKLSQREKLIREIEARRLECLVCVEAIKSHNSVWSCHNCYHILHLSCIIKWASSSKSQDGWRCPACQNVEKDVPRDYYCFCGKVKSPQFNRNDIAHSCGEVCGRIEGCSHACTLLCHPGPCPPCQANVTRECGCGKTTKTMQCYLKESIECEAKCQKLLNCELHECEEKCHEGKCKPCEQKVDQKCHCGKQDRQVACTRDSHEKKTYSCGKPCGRDLTCENHKCKDCCHAGECRPCKLSPEVVTSCPCGKMPVVLEQRKSCVDPIPVCDGICNKTLRCGKAAHPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPMPCNYTLSCGKHKCDQPCHRGNCPSCYRSSFEELYCECGAEVIYPPVPCGTKRPACKRPCSRQHPCEHPVQHNCHSAANCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLTCGRHKCIKPCHEGPCQAVGEVCKQNCTTVRGGCGHKCMAACHDGDCPETACKEMVEVTCECGNRKQMRACYDFAREYRRIATAQLASSMAEVQRGNTIELSDILGPVKMNNNKALECNDECRTLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRGYAKKDPTLVKTIHDSLTNLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKEKSWLPAQSIMEVMQRESGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542617;
- 90% Identity
- iTF_01541840; iTF_01542617; iTF_00241846; iTF_01223894; iTF_00390045;
- 80% Identity
- -