Basic Information

Gene Symbol
RXR
Assembly
GCA_963989415.1
Location
OZ022519.1:17310678-17328341[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.7e-46 5e-42 146.0 0.1 202 407 202 403 153 405 0.90

Sequence Information

Coding Sequence
ATGGTAAAAAAAGCGTCGAGAGGGCTGAGTCTGGACAACAGCAACATGTCCATGTCTTCGGTGGGCCCACAAAGTCCCCTTGACATGAAGCCCGACACAGCAAGCCTCATAAATCCGGGAAACTTCAGCCCCTCTGGTCCAAATAGTCCAGGATCGTTCAACGCTGGTTGTCACAGCAACCTCTTGAGCACATCGCCGAGTGGTCAGAACAAGGCAGTCGCCCCATACCCACCGAACCACCCCTTATCCGGAAGCAAACACCTCTGTTCGATTTGCGGGGATCGTGCCAGCGGCAAACACTATGGCGTTTACAGCTGCGAGGGTTGCAAGGGCTTCTTCAAGAGGACCGTTCGCAAGGATTTATCGTATGCATGTCGCGAGGAGAAGTCTTGCATCATCGATAAACGGCAGAGAAATCGATGTCAGTATTGTAGATACCAGAAATGCTTGGCAATGGGGATGAAGAGGGAAGCGGTTCAAGAGGAACGGCAGCGCACCAAGGAGAGGGATCAGAGCGAGGTGGAAAGTACGAGCAGTTTGCACTCGGATATGCCGATCGAACGCATTCTCGAGGCTGAAAAACGAGTCGAGTGCAAAATGGAGCAACAGGGAAATTACGAGAATGCAGTGTCGCACATTTGCAACGCCACGAACAAACAGCTGTTCCAGCTGGTAGCATGGGCGAAACACATCCCACATTTTACGTCGTTACCACTGGAGGATCAGGTACTTCTACTCAGGGCTGGCTGGAACGAGCTGCTGATAGCCTCCTTTTCCCACCGATCCATCGACGTGAAGGACGGTATCGTTTTGGCAACAGGGATCACTGTCCATCGAAACTCGGCGCAGCAGGCGGGCGTGGGCACGATATTCGATAGAGTACTGTCAGAGCTTGTGTCGAAAATGCGCGAAATGAAAATGGACAGGACCGAACTTGGCTGCCTCAGGTCCATCATCCTTTTCAATCCCGAAGTACGGGGCTTGAAGTCCATTCAGGAAGTCAGTCTACTCCGCGAGAAGATCTACGCAGCACTAGAAGAATACTGTCGTGTTTCCTGGCCCGATGATCCAGGCAGGTTCGCGAAATTATTGCTCCGTTTGCCGGCAATCCGTTCGATCGGACTTAAGTGCCTGGAGCACTTGTTCTTTTTCAAGATGATCGGTGACGTTCCGATCGATGACTTCCTCGTGGAGATGTTGGAATCGCGATCGGACCCTTAG
Protein Sequence
MVKKASRGLSLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFNAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVSLLREKIYAALEEYCRVSWPDDPGRFAKLLLRLPAIRSIGLKCLEHLFFFKMIGDVPIDDFLVEMLESRSDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01498273; iTF_00306340; iTF_01498245; iTF_00962567; iTF_01498248; iTF_00962537; iTF_00962540; iTF_01498258; iTF_00306291; iTF_00306294; iTF_00962552; iTF_00132673; iTF_00132642; iTF_00131986; iTF_00131991; iTF_00132638; iTF_00132031; iTF_00131314; iTF_00131317; iTF_00131356; iTF_00391393; iTF_00633699; iTF_00633653; iTF_00391318; iTF_00633656; iTF_00391322; iTF_00385634; iTF_00385355; iTF_00385341; iTF_00385344; iTF_01406530; iTF_01406620; iTF_01406528; iTF_01512866; iTF_01512881; iTF_01512853; iTF_01512856; iTF_00200771; iTF_00200775; iTF_00200857; iTF_00452611; iTF_00452598; iTF_00452602; iTF_00452636; iTF_00175140; iTF_00159137; iTF_00175777; iTF_01412353; iTF_01413218; iTF_00718595; iTF_00719459; iTF_01048259; iTF_00175812; iTF_01048933; iTF_00060422; iTF_01048294; iTF_01303398; iTF_00718599; iTF_00939591; iTF_01412423; iTF_01413447; iTF_01048936; iTF_00174218; iTF_00175786; iTF_00938730; iTF_01414218; iTF_00050987; iTF_00939691; iTF_00159148; iTF_00718700; iTF_01412364; iTF_00060238; iTF_00754670; iTF_01411534; iTF_00175055; iTF_01303535; iTF_01200176; iTF_00938833; iTF_01049009; iTF_00051090; iTF_00060242; iTF_00718610; iTF_00754674; iTF_01048946; iTF_01411538; iTF_00175059; iTF_01413203; iTF_00754836; iTF_01200180; iTF_00159189; iTF_00719445; iTF_00174390; iTF_01048246; iTF_01414294; iTF_01303383; iTF_01413207; iTF_00939576; iTF_01200280; iTF_00719449; iTF_00754682; iTF_01414202; iTF_01048251; iTF_01303387; iTF_00174204; iTF_00175772; iTF_00719516; iTF_00939580; iTF_00050973; iTF_00060253; iTF_00175069; iTF_00938717; iTF_01411613; iTF_01412349; iTF_00159134; iTF_01411550; iTF_01414206; iTF_01200191; iTF_00050976; iTF_00174208; iTF_00938720; iTF_00351041; iTF_00046177; iTF_00168450; iTF_00438114; iTF_00351171; iTF_00168580; iTF_00168453; iTF_00351046; iTF_00438150; iTF_00438822; iTF_00728678; iTF_00728710; iTF_00728682; iTF_00438795; iTF_00168464; iTF_00351057; iTF_00438100; iTF_00728693; iTF_00438104; iTF_00438780; iTF_00438783; iTF_00397379; iTF_00048033; iTF_00414337; iTF_01103585; iTF_01129377; iTF_00841154; iTF_00996418; iTF_01002114; iTF_01003554; iTF_01006178; iTF_00398115; iTF_00828803; iTF_01364675; iTF_00997060; iTF_01001284; iTF_01129412; iTF_00048005; iTF_00266533; iTF_00414341; iTF_00459781; iTF_00798661; iTF_01560517; iTF_00439558; iTF_01306566; iTF_00397319; iTF_00997063; iTF_01364679; iTF_01508935; iTF_00756680; iTF_00938088; iTF_01001288; iTF_01003592; iTF_00047017; iTF_00459785; iTF_00828809; iTF_00938057; iTF_01560457; iTF_00397322; iTF_00629130; iTF_00828842; iTF_00905450; iTF_01000586; iTF_01207402; iTF_01207434; iTF_01299210; iTF_00343211; iTF_01006091; iTF_00439500; iTF_00798604; iTF_01379244; iTF_01560460; iTF_00046189; iTF_00058733; iTF_00773837; iTF_00905453; iTF_00905485; iTF_01001453; iTF_01002157; iTF_01006094; iTF_00263503; iTF_00398159; iTF_00459855; iTF_00629135; iTF_00773839; iTF_00997103; iTF_01299215; iTF_00058768; iTF_00343216; iTF_00439504; iTF_00841104; iTF_00996368; iTF_01379248; iTF_00058737; iTF_00798609; iTF_01379345; iTF_00262738; iTF_00266482; iTF_00414386; iTF_01001298; iTF_01004274; iTF_01004338; iTF_00343251; iTF_01364723; iTF_00829588; iTF_00841108; iTF_00996372; iTF_01002100; iTF_00047061; iTF_00263509; iTF_00263573; iTF_01004277; iTF_01306485; iTF_00047990; iTF_00266486; iTF_01508886; iTF_00057975; iTF_00773879; iTF_01002103; iTF_01299351; iTF_00756728; iTF_00829528; iTF_01005112; iTF_00047993; iTF_01306489; iTF_00047002; iTF_00058010; iTF_00629146; iTF_00773850; iTF_00905466; iTF_01005210; iTF_00057979; iTF_00756667; iTF_01005115; iTF_01207387; iTF_01508891; iTF_00059484; iTF_00265724; iTF_00265788; iTF_00829532; iTF_00938044; iTF_01000572; iTF_01103580; iTF_01103644; iTF_00046173; iTF_00046237; iTF_00262685; iTF_00629181; iTF_01000637; iTF_00047006; iTF_01003550; iTF_01129374; iTF_00398111; iTF_00756671; iTF_00938047; iTF_01207391; iTF_00059488; iTF_00059520; iTF_00262688; iTF_00265728; iTF_01000576; iTF_00316868; iTF_00316810; iTF_00316813; iTF_00317488; iTF_00317492; iTF_00317525; iTF_00294565; iTF_01120225; iTF_01473953; iTF_00298338; iTF_00298402; iTF_01538050; iTF_00252099; iTF_00291620; iTF_00770404; iTF_01198692; iTF_01473956; iTF_00255109; iTF_00292293; iTF_01057733; iTF_00296102; iTF_01056134; iTF_01120230; iTF_00297639; iTF_00298343; iTF_00252104; iTF_01199432; iTF_01473256; iTF_00292297; iTF_00294505; iTF_00295337; iTF_01057673; iTF_01198697; iTF_00255114; iTF_01056842; iTF_00297579; iTF_00770443; iTF_00291564; iTF_00292332; iTF_00295276; iTF_00296044; iTF_00296812; iTF_01537996; iTF_00252845; iTF_00254413; iTF_00293805; iTF_00294509; iTF_00296877; iTF_01199437; iTF_01057678; iTF_00292975; iTF_00293039; iTF_00297583; iTF_01056975; iTF_01395151; iTF_00295280; iTF_00296048; iTF_00296816; iTF_01056016; iTF_01056848; iTF_01120272; iTF_01475536; iTF_01538000; iTF_00254353; iTF_00291569; iTF_01120241; iTF_00252850; iTF_00255154; iTF_00298354; iTF_00252147; iTF_00292979; iTF_01395187; iTF_00293748; iTF_01056020; iTF_01395156; iTF_00253654; iTF_00254358; iTF_01199478; iTF_01473207; iTF_01475479; iTF_00293752; iTF_01198744; iTF_01474776; iTF_01056857; iTF_01057689; iTF_01473210; iTF_01475482; iTF_00252891; iTF_00253595; iTF_00296827; iTF_01538011; iTF_01474012; iTF_01474717; iTF_01056030; iTF_00770399; iTF_00253600; iTF_01474720; iTF_01353766; iTF_00857672; iTF_00857674; iTF_01353770; iTF_01353807; iTF_00857713; iTF_01353781; iTF_00879657; iTF_00879661; iTF_00879670; iTF_00879802; iTF_00460554; iTF_00460556; iTF_00460567; iTF_00460894; iTF_01254820; iTF_00265030; iTF_00730086; iTF_01077542; iTF_01254822; iTF_00730765; iTF_00730767; iTF_01077487; iTF_00730131; iTF_01077491; iTF_00265079; iTF_00265016; iTF_00279992; iTF_00279995; iTF_00280027; iTF_01254875; iTF_00265020; iTF_00730845; iTF_01077503; iTF_00730080; iTF_01390244; iTF_01390247; iTF_01390395; iTF_00881285; iTF_00882055; iTF_00881352; iTF_00882216; iTF_00882058; iTF_00882992; iTF_00882067; iTF_00882995; iTF_00881272; iTF_00881275; iTF_00883100; iTF_00883006; iTF_01087237; iTF_01087287; iTF_01087224; iTF_01087228; iTF_01391141; iTF_01392005; iTF_01392008; iTF_01392019; iTF_01394327; iTF_01394330; iTF_01392094; iTF_01394430; iTF_01015846; iTF_01355330; iTF_01355340; iTF_01355500; iTF_01015919; iTF_01015834; iTF_01015837; iTF_01355327; iTF_01090052; iTF_01090022; iTF_01090025; iTF_01090036; iTF_00280625; iTF_00280641; iTF_01409158; iTF_01405732; iTF_01405734; iTF_01409160; iTF_01409267; iTF_01405854; iTF_01424422; iTF_01424436; iTF_01424408; iTF_01424411; iTF_01520262; iTF_01520341; iTF_01520249; iTF_01520252; iTF_01099303; iTF_01099209; iTF_01099214; iTF_01099223; iTF_01454122; iTF_01454252; iTF_01454110; iTF_01454112; iTF_01391272; iTF_01391138; iTF_00085417; iTF_00141249; iTF_00219137; iTF_00229409; iTF_00684833; iTF_00873825; iTF_01065601; iTF_01068353; iTF_01417761; iTF_00215746; iTF_00225954; iTF_00227298; iTF_00229378; iTF_00230722; iTF_00360930; iTF_00684194; iTF_00086307; iTF_00118051; iTF_00222563; iTF_00224611; iTF_00360963; iTF_01068323; iTF_00142500; iTF_00219140; iTF_00219172; iTF_00224580; iTF_00227332; iTF_00232004; iTF_00733988; iTF_01067652; iTF_01070404; iTF_01417732; iTF_00084581; iTF_00086309; iTF_00221285; iTF_00227301; iTF_00228709; iTF_00233253; iTF_00088038; iTF_00215046; iTF_00229382; iTF_00232038; iTF_01068326; iTF_00084583; iTF_00141863; iTF_00224583; iTF_00228007; iTF_00233287; iTF_00360935; iTF_00761031; iTF_01066983; iTF_01417735; iTF_00215080; iTF_00221320; iTF_00982344; iTF_01069032; iTF_00141257; iTF_00221289; iTF_00221961; iTF_00232009; iTF_00684809; iTF_01069001; iTF_00215050; iTF_00233258; iTF_00684202; iTF_00873834; iTF_01066282; iTF_00217771; iTF_00217803; iTF_00223915; iTF_00684811; iTF_01065611; iTF_01069707; iTF_00086380; iTF_00219820; iTF_00220620; iTF_00221932; iTF_00761004; iTF_00982316; iTF_01066316; iTF_00231341; iTF_00231373; iTF_00983021; iTF_01069005; iTF_01419693; iTF_00214414; iTF_00214446; iTF_00217774; iTF_00219150; iTF_00219854; iTF_01066286; iTF_01539630; iTF_00084623; iTF_00227311; iTF_00360271; iTF_00360943; iTF_00761007; iTF_00982319; iTF_01169199; iTF_00086320; iTF_00219824; iTF_00221936; iTF_00229392; iTF_00232656; iTF_00734000; iTF_00982992; iTF_00142513; iTF_00218449; iTF_00223217; iTF_00224593; iTF_00360241; iTF_00676049; iTF_01169201; iTF_01419665; iTF_01539665; iTF_00084594; iTF_00221298; iTF_00231346; iTF_00232626; iTF_00676082; iTF_01068338; iTF_01169234; iTF_01417746; iTF_01539634; iTF_00087187; iTF_00088851; iTF_00118067; iTF_00214419; iTF_00215731; iTF_00232019; iTF_00233267; iTF_00684819; iTF_00982995; iTF_00215060; iTF_00218484; iTF_00222548; iTF_00223220; iTF_00223252; iTF_00360244; iTF_01067668; iTF_01070420; iTF_01419668; iTF_00087189; iTF_00088853; iTF_00215765; iTF_00218453; iTF_00225941; iTF_00230741; iTF_00676053; iTF_00733973; iTF_01067637; iTF_00118038; iTF_00142486; iTF_00225974; iTF_00141271; iTF_00141879; iTF_00215735; iTF_00228695; iTF_00230711; iTF_00232631; iTF_01066295; iTF_01066999; iTF_01070391; iTF_00118040; iTF_00217784; iTF_00222552; iTF_00222584; iTF_00225944; iTF_00684216; iTF_00873848; iTF_01066968; iTF_00087257; iTF_00088025; iTF_00219833; iTF_00733977; iTF_00982329; iTF_01069017; iTF_00088090; iTF_00142490; iTF_00221946; iTF_00227994; iTF_00228698; iTF_00230714; iTF_00761018; iTF_01067642; iTF_00088027; iTF_00141851; iTF_00228027; iTF_00231355; iTF_01070395; iTF_00085404; iTF_00214428; iTF_00228732; iTF_01066972; iTF_00220605; iTF_00223901; iTF_00227997; iTF_01065597; iTF_00085406; iTF_00085470; iTF_00088894; iTF_00141246; iTF_00141854; iTF_00684190; iTF_00873822; iTF_00983006; iTF_01065630; iTF_01069694; iTF_01069726; iTF_01539646; iTF_00220639; iTF_00223231; iTF_00360255; iTF_01419679; iTF_00088864; iTF_00218464; iTF_00220608; iTF_00223904; iTF_00223936; iTF_00232640; iTF_00676064; iTF_01069696; iTF_01234369; iTF_01234371; iTF_01234403; iTF_00216420; iTF_00230052; iTF_00216453; iTF_00230087; iTF_00216424; iTF_00230056; iTF_00217097; iTF_00217129; iTF_00225260; iTF_00217102; iTF_00225295; iTF_00225264; iTF_01233060; iTF_01233019; iTF_01233023; iTF_01232422; iTF_01232425; iTF_01232448; iTF_01235050; iTF_01235082; iTF_01235052; iTF_01233682; iTF_01233715; iTF_01233684; iTF_00226620; iTF_00226654; iTF_00226624; iTF_00378089; iTF_00378042; iTF_00378045; iTF_00378785; iTF_00381862; iTF_00381864; iTF_00381931; iTF_00378864; iTF_00379698; iTF_00381140; iTF_00379642; iTF_00379644; iTF_00381085; iTF_00378783; iTF_00381087; iTF_00393642; iTF_00393659; iTF_00393629; iTF_00393631; iTF_01214826; iTF_01214828; iTF_01215125; iTF_01270539; iTF_01269827; iTF_01269837; iTF_01269869; iTF_01270522; iTF_01270586; iTF_01269824; iTF_01270528; iTF_01269128; iTF_01269085; iTF_01269088; iTF_01513516; iTF_01514180; iTF_01514214; iTF_01514183; iTF_01514195; iTF_01513500; iTF_01513534; iTF_01513503; iTF_00769645; iTF_00769649; iTF_00769659; iTF_00769757; iTF_00303055; iTF_00303058; iTF_00303163; iTF_00303068; iTF_01492913; iTF_01492915; iTF_01492953; iTF_01492926; iTF_01228434; iTF_01228398; iTF_00762579; iTF_00862594; iTF_00966052; iTF_00860422; iTF_00864038; iTF_00860424; iTF_00866760; iTF_00966056; iTF_00183338; iTF_00866730; iTF_00866732; iTF_00183309; iTF_00860461; iTF_00862638; iTF_00183311; iTF_00863983; iTF_00861232; iTF_00863986; iTF_00762611; iTF_00866036; iTF_00762581; iTF_00866038; iTF_00763255; iTF_00861175; iTF_00866071; iTF_00763257; iTF_00861177; iTF_00864665; iTF_00763290; iTF_00864667; iTF_00966076; iTF_00864702; iTF_00862592; iTF_00861954; iTF_00861901; iTF_00861904; iTF_01071043; iTF_01071047; iTF_01071067; iTF_00963213; iTF_00963873; iTF_00964515; iTF_01122472; iTF_00961866; iTF_01122506; iTF_00963884; iTF_01123084; iTF_01123119; iTF_00963216; iTF_01123088; iTF_00963251; iTF_00964502; iTF_00964536; iTF_00964505; iTF_01122457; iTF_00961851; iTF_01123099; iTF_00963228; iTF_01122460; iTF_00961885; iTF_00963901; iTF_00961854; iTF_00963870; iTF_00625518; iTF_00625522; iTF_00625559; iTF_01514844; iTF_01514876; iTF_01514847;
90% Identity
iTF_00216420;