Basic Information

Insect: Vespula germanica
Gene Symbol: RXR
Assembly: GCA_905340365.1
Location: HG996539.1:3598870-3606333[-]

Transcription Factor Domain

TF Family: SF-like
Domain: zf-C4|SF-like
PFAM: AnimalTFDB
TF Group: Zinc-Coordinating Group
Description: The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.2e-44 4.2e-41 141.4 0.0 206 405 223 418 172 421 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.2e-44	4.2e-41	141.4	0.0	206	405	223	418	172	421	0.91

Sequence Information

Coding Sequence: ATGAATACTATAGTCTTTTCGCAAGCTCACGAAACTTGCTCATCATTATGCCTTATGGATGGTAGCATATgGTTAAGCCTGGACAATAGTAACATGTCGATGTCATCAGTAGGTCCACAGAGTCCACTGGACATCAAACCCGATACGGCTAGTCTTATAAACCCAGGAAACTTCAGTCCTTCTGGTCCTAACAGTCCAGgATCCTTCAACGCTGCTGGTTGTCACAGCAACCTCTTGAGTACGTCGCCAAGTGGACAGAACAAGGCAGTTACACCCTACCCACCGAATCACCCTCTGTCAGGCAGCAAACATCTCTGTTCGATCTGTGGTGACCGAGCTAGTGGCAAACACTACGGTGTTTACAGcTGCGAGGGTTGTAAAGGATTCTTCAAAAGGACCGTCCGTAAGGATCTCTCGTATGCGTGCCGTGAAGAAAAGTCCTGCATAATCGACAAAAGACAGAGAAATCGTTGTCAATATTGTCGATATCAAAAATGCTTGGCGATgggaatgaaaagagaagcaGTGCAAGAAGAGCGACAACGTACTAAGGAAAGAGATCAGAGCGAGGTCGAAAGCACAAGTAGCCTTCACTCTGACATGCCGATCGAACGTATTTTGGAAGCTGAGAAACGAGTTGAATGCAAGGTCGAGCATGAAGGAAATTACGAgAATGCAATATCGCACATTCGCAACGCCACGAACAAACAGCTGTTCCAGCTGGTGGCATGGGCCAAGCACATCCCGCATTTTACCTCGTTGCCGTTGGAGGATCAGGTACTATTACTCAGGGCTGGTTGGAACGAGTTGCTGATAGCATCCTTTTCTCATCGTTCCATCAATGTCAAGGACGGTATCGTTTTGGCCACTGGCATTACCGTCAACCGTAATTCGGCGCAACAGGCTGGTGTAGGGACGATATTTGAACACGTGCTATCCGAACTTGTAGCTAAGATGCGAGAAATGGAGATGGACAAAACTGAATTAGGTTGTCTCAGATCAATAATCCTCTTCAACCCTGACGTACGAGGTTTAAAATCCATCCAAGAGGTCAGTCTTCTACGTGAGAAGATCTATGCAGCTTTAGAAGAATATACACGTGTATCTTGTCCGAACGATCCAGGAAGATTTGCTAAGCTATTGCTTCGCCTACCGTCCATTCGTTCGATCGGCCTCAAATGTCTCGAACATCTCTTCTTCTACAAGCTGATCGGTGATGTACCGATCGATGACTTCCTAATGGAGATGCTGGAGTCACCCTCGGATCCTTAG
Protein Sequence: MNTIVFSQAHETCSSLCLMDGSIWLSLDNSNMSMSSVGPQSPLDIKPDTASLINPGNFSPSGPNSPGSFNAAGCHSNLLSTSPSGQNKAVTPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKVEHEGNYENAISHIRNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSINVKDGIVLATGITVNRNSAQQAGVGTIFEHVLSELVAKMREMEMDKTELGCLRSIILFNPDVRGLKSIQEVSLLREKIYAALEEYTRVSCPNDPGRFAKLLLRLPSIRSIGLKCLEHLFFYKLIGDVPIDDFLMEMLESPSDP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00306305;
90% Identity: iTF_01512866;
80% Identity: iTF_01514180; iTF_01514214; iTF_01514183; iTF_01514195; iTF_01513500; iTF_01513534; iTF_01513503;