Carg019853.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- rfx7.L
- Assembly
- GCA_905187575.1
- Location
- LR994584.1:11207261-11218937[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-33 1.5e-29 103.0 0.0 3 78 72 147 70 148 0.98
Sequence Information
- Coding Sequence
- ATGGACTCCAGTAAAATAGCGTCCATGCAGCAGATAGTGGAAAACACTCTCAGTCAAGAAGGGCGACAAAGGGTGTCACAATTGCTAGAGGCTGTGGAGGCACTGAGCGGAGCTGAGAGGCTGTTACTGTACCTGCGGCTGCCTACTGGGGTACCTCCACATGACCCTCTAAAACAGCCAGTAAATCCCCTGGGATCCAGGGCTGAGCTGCAGCAGACCGTGACATGGATACAAACCCACTTGGAGGTGGATCCCGACGTATCTTTGCCCAAACAGGATGTTTATGATGAGTACATAGCTCACTGTATGAGCTGCAATATGAAGCCTCTATCAACAGCTGACTTTGGCAAAGTGATGAAGCAAGTGTACCCTACTGTACGGCCGCGCCGCCTGGGCACTCGTGGTAACTCGAGGTACTGTTATGCCGGTCTTCGCAAGAAAATCAAACTTGAAACACCATATTTGCCCGATTTAGGGGAAAGTTCTAAGGAGTTTAATGCCCCATGTAGAGAGAGTGAAAGAATAGTTTGTGATTGGGCTGAAACTAAGTTTGGCGTGAAGTTCGGCAGCGTGGTGGAGTTGTCGCGTCACCTGGCGGCGCTCGGTACGCGCGCGCCGCTCGGGCCCGCCAGCGCGTCGCCGCCGCACGCGCCCATACACGGTCCTACAGAAGATTCTCCAGGTCCACAGCTGATAAAACAATTAAAGCGTAAATTACAGGGTACAGGTACGCCCGGACGTCCGAAAAAGAACAAGGGGCAAGATACGTCAGGCGTATCGCCGCCCTCTACTTCGTACGTCCCGCAGTTGCCCGTAAAACACGAGAGCGAGATTCCCGCCGAAACCAGCTACGGCTACCAGCCCGCGTACGTGCCAGTGTACGACGTCAGACCGTCATTCCCCTACACGGCGCCCCCCCACGCGCATCCCCCGCACGCGCCCTCCGCGCCGCACCCGCCCATCTCCGTGCACGACTACCGCCCGGACCCCTACGTGTTCGATCCCCCGTACGCGCCCCGGGATCTCACCATACCGACCGACGCCACTCACAACCTGCCCATAAACCTCAGCAGCGACGCGTCCCTCGACCTGTCCACCGAGCGAACCGAGTGGCAGCGGCGGCGGCCCCCGGACCCCCCGGCCGCGCGATTGCCGCCCCTGCCAGGAAAAAAACTCATTCTTGAAACCTATCAGAGCGAAACGCGAGCCGGCTCGCCGCGCTCCTCGCAGATCGACACGCGCGCGGCCCACACGGAGGAGTTCCCGAGGGCCGAGTACCTGCCCAAAAAGATGCGCGCCGCCGAAATGTCCGGGGGAAAGTTCGCAGTGGCGCGCCAGGCTGCGATCGGAGCGGAGCCCACGTCGTCAACCGGCGCCACCGGTGCCGACGCGTCCCTTCGTTCAGAGGTTGCTTTTTTAGAGGATCCAAAAAACTTAACGAACCGGTCCACAAGCACCGCCGCGGCGCTGGCCCGGGAGGAACTAGAGGCGGCGAGTCCGACACAGTCGGTGAAGGCTCCGACGCCTAAGAGCGATCGCACCAGAATGCGCAAGCCCTACGACCGAACTAAAAAGTTATCCCCGGATGGAGCAGAACAATACGACGGAGCCGTCACGCCCGACGCCTACTGCGGGCTAGACGGTATCAACATCAAAACCGGGGTGATATGCGACGAAAAGCATTCGGAAATTTTTAATCGCGAACGTGTCATCAGCATCTGCAATATCGATAAACACGATTTAGACGACTACCTCAACGAAGGTAATAGTCAGGAGCACGAGGAGGAGCTAATGCAATACTTTCACCGAGGAAATGCTAACGAGGCCCCGAACAACTCGACAACGAACGCTAAAACTTTTTTAGATGCAAGCCAGGACCCACACGACGAACACAGCCAAGGGAAAAATGAGAAGTTATCGCAGTTACGCGAACTTCTAGCTAAAAATCTCAAAAATCAAAGTGGGTCCAATTCTATACCTCAAAATAACGCCACAAGCGAAGATGCAAATTTACCCCTCACCGACGACCATTTATCCGACCTTAATAAAAAAGTTAATGAAGGGGCTTTTAAACCAGTGAACAACATATCCGACGTTGTAAACGGTTCTGCCAACGTGCAAAATACGGAATGTACAAAAAACCCACTTCCATTGCCCAACGAAAACGGAATACATATTCCGGAAACCACTCAAAATATATTACTTAATTCCATAGCGCCGACTCAACTTTACAACGGTACTATGAACCACGAACCGCAGAGTCCTACGACTAGAACTCAACAGTACGATTTTGTGCCTATATCGGAGGGTTGTCACTCTCCCGCTAACGTCCGATCCAAATCTCCCTCGAGCTTGGGGCCGAGAGGCAACAGTCCGTCCAAAGCTGCTAAGCTAGTACTGTGTGGCTCGCTCCAGACGTCGCCCAATTCTCACAGCACGGCAGCCAGTCCGTTCGTCAGTCCCCGGAACACCCCGGTGCCTCGCTCGCGCCTGTTCCCGCGCCCGATACCGAAACACAACGAGAAAAGGAAACGCAACACGCTCACACTCGGCGTCAACGATTCGTGCCCGAAGCCGTTCGCCATACCCAACGACCAGAAATACATACCCAGAACCACGCTGAGCTCGACCATCAAATATTGCCAACCGATGTCTGCGCCGCCTTCGCCGAACATACTGACGAATTACAAAAACCAACTCATGCAAAGCGGCGGAATCACTAACGGTTCCAATAATATGAGTATTAATTTCGTACCAAATTTGTTTCGCGACAATATTAACGGCGAACTCGCCCAGCCCCTGTCGGCAGATCCGCTCTCGAGCGAGGTGAGCCAGTTTTTTCAAGAGCCCATGGTTAATTATAGATTGCACGACGTTTCTTTTAGGTCGCAATCTGTGCCCTTAAAACAGGCCACTTTGAACGTCGGACTGCTGAGTTACAACAACACACCGGTCGGGTCCGTACCGCCGACTCCGGTACCGAATGAGTTCAGTGACTTCGGATCGCTCGCAGAAACGTGCGATATATCCAAAGCTGGCCTAAATCCCGAAACGTTAGATAAAATATATGACGCGATCGACAGCAGCAACGACGTACTTAATACCGCCGCAACGACTAATCTTTTGAATCCTAATCAAGCTATCACGAACGGTTGCGATCCCCTGCCCGACCAGCAGATACTCGCAGAGGAGCAGATACATCCGTTCATCGCCACTAACACCGGCATGCTCGATAGGAACGCCCAATTCAACGATTCCTTTGCCGGCGACGCGGGCACCGAAGATAATGTAGAAGAGTTCCTCAAGCGCACCAACAGCATAGAGTTTGACTTGTCAGACTTAGTCACCGAGAAGAACAAGTATTATACCTCAAGATCGGTGCCCAGCACGCCCCTGCCCTACAAGAGAACCGCACCGAACTTGCAGATAGACTCTAGACGTTCCAGAGAATTGTTCACTGCAGATTTCAACCTCGTTTCGAATGGTATATCGTCGAAATCCGTGCCGTCTACTCCGCAACTGCCCGAGGACAGGAGCGTCTTCAGTTACAGCAACAGAGATTACCTGATCAACGGAAATTCTGTCGAGGTAATATGTGGCCCGAACCAGATAAACACCGTAGTCGAGAGCGACCAAACCCTGGCGTCGCCTTTGGACATGTTGCGTGAGGACATCCTGGAACCATTGTCGGGGCCCACCGCAGATTTGCTGGCAGATTTTGACAAGATAGACGGTCCGCCATACGTCGTTGACCTCTAG
- Protein Sequence
- MDSSKIASMQQIVENTLSQEGRQRVSQLLEAVEALSGAERLLLYLRLPTGVPPHDPLKQPVNPLGSRAELQQTVTWIQTHLEVDPDVSLPKQDVYDEYIAHCMSCNMKPLSTADFGKVMKQVYPTVRPRRLGTRGNSRYCYAGLRKKIKLETPYLPDLGESSKEFNAPCRESERIVCDWAETKFGVKFGSVVELSRHLAALGTRAPLGPASASPPHAPIHGPTEDSPGPQLIKQLKRKLQGTGTPGRPKKNKGQDTSGVSPPSTSYVPQLPVKHESEIPAETSYGYQPAYVPVYDVRPSFPYTAPPHAHPPHAPSAPHPPISVHDYRPDPYVFDPPYAPRDLTIPTDATHNLPINLSSDASLDLSTERTEWQRRRPPDPPAARLPPLPGKKLILETYQSETRAGSPRSSQIDTRAAHTEEFPRAEYLPKKMRAAEMSGGKFAVARQAAIGAEPTSSTGATGADASLRSEVAFLEDPKNLTNRSTSTAAALAREELEAASPTQSVKAPTPKSDRTRMRKPYDRTKKLSPDGAEQYDGAVTPDAYCGLDGINIKTGVICDEKHSEIFNRERVISICNIDKHDLDDYLNEGNSQEHEEELMQYFHRGNANEAPNNSTTNAKTFLDASQDPHDEHSQGKNEKLSQLRELLAKNLKNQSGSNSIPQNNATSEDANLPLTDDHLSDLNKKVNEGAFKPVNNISDVVNGSANVQNTECTKNPLPLPNENGIHIPETTQNILLNSIAPTQLYNGTMNHEPQSPTTRTQQYDFVPISEGCHSPANVRSKSPSSLGPRGNSPSKAAKLVLCGSLQTSPNSHSTAASPFVSPRNTPVPRSRLFPRPIPKHNEKRKRNTLTLGVNDSCPKPFAIPNDQKYIPRTTLSSTIKYCQPMSAPPSPNILTNYKNQLMQSGGITNGSNNMSINFVPNLFRDNINGELAQPLSADPLSSEVSQFFQEPMVNYRLHDVSFRSQSVPLKQATLNVGLLSYNNTPVGSVPPTPVPNEFSDFGSLAETCDISKAGLNPETLDKIYDAIDSSNDVLNTAATTNLLNPNQAITNGCDPLPDQQILAEEQIHPFIATNTGMLDRNAQFNDSFAGDAGTEDNVEEFLKRTNSIEFDLSDLVTEKNKYYTSRSVPSTPLPYKRTAPNLQIDSRRSRELFTADFNLVSNGISSKSVPSTPQLPEDRSVFSYSNRDYLINGNSVEVICGPNQINTVVESDQTLASPLDMLREDILEPLSGPTADLLADFDKIDGPPYVVDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744341; iTF_01178138; iTF_00403437; iTF_00164033; iTF_01247792; iTF_00934474; iTF_00933322; iTF_01217208; iTF_00405660; iTF_00261585; iTF_00925469; iTF_00786504;
- 90% Identity
- iTF_01178138; iTF_00744341;
- 80% Identity
- -