Hhel011913.1
Basic Information
- Insect
- Helleia helle
- Gene Symbol
- rfx7.L
- Assembly
- GCA_963853865.1
- Location
- OY971421.1:11797571-11811239[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-33 1.5e-29 103.3 0.0 3 78 150 225 148 226 0.98 2 3 1.2 1.3e+04 -2.3 0.0 16 38 950 972 947 976 0.83 3 3 0.68 7.5e+03 -1.5 0.0 23 41 1235 1253 1231 1257 0.80
Sequence Information
- Coding Sequence
- ATGGATAGGACATCACCATTTCAACCTTGCGCAACTGACGACAATTCGAAAAATGTGAAAACAGAAGGAGAAATAGTAGATGACACGAAACTTCATCGGGAAAATGTCAATCATCCAAAACATAGGCAAACTGCGTCTTACGATAAAGAAAGTGTTGTTCCTTCGAGTATTGTTCCGGGACCATCAAGTGAAACGAGCACCGGTTCCATTCCGGCCAATACCAAAGAGTCCAAAATGGACTCCAGTAAAATAGCTTCTATGCAGCAGATTGTGGAAAACACTCTAAGtCAAGAAGGAAGGCAAAGGGTGTCACAACTATTAGAGGCTGTGGAGGCTCTGAGTGGAGCAGAGAGACTATTATTGTATCTTCGACTACCAACAGGTGTACCTCCCCATGATCCTTTGAAACAACCTGTCAATCCCTTGGGATCCAGgGCAGAGTTACAACAGACTGTGACATGGATTCAAACTCATTTAGAAGTAGACCCAGATGTATCCCTGCCCAAGCAGGAtgtgtatgatgaatatatatCTCATTGTATGAGTTGCAATATGAAGCCTTTGTCGACTGCCGATTTTGGCAAAGTTATGAAGCAGGTGTACCCGACAGTGCGTCCCCGGCGTCTAGGTACGCGCGGTAACTCAAGGTACTGCTACGCTGGGCTCCGTAAAAAGGTCAAGCTTGAAGTACCACATCTACCTGACTTGGGTGAAAGCTCTAAGGAATTTAATGTCGCTTCCCGAGAGAGTGAACGGATTGTCTGTGACTGGGCTGAAATTAAATTagGCGTGAAGTTTTCGACTATACTAGAATTATCAAGGCACTTGGCTTCCTTGAGTACGACGCAACGAGCTCCGCCTGGTCCCGCGAGTGCGTCCCCACCGCACGCGCCTATGCATGgTGCAACAGATGAAGCTCCAGGCCCACAGCTGATTAAGCAATTGAAGCGTAAATTACAGACAACGGGAACACCCGGGCGTCCTAAAAAGAACAAAGGACAAGAGACGTCTGGAGTATCTCCACCGTCTACTTCATACGTCCAACACACGCCTTTGAAACATGAAAGCGAAATCACATCCGAAGCAAGCTATGGGTATCAACCGGCTTACGTACCAGTGTACGATGTCCGGCCATCTTTCTCTTACACGGCTCCGCCTCACGCGCACCCCCCACACGTACCTTCTACGCCACATCCGGCTATATCAGTGCACGAATACCGACCTGATCCCTACGTTTTTGATCCTCCTTACGCACCTCGAGACCTGACCATACCCACTGACACAACACTCAATCTACCTATAAACTTGAGTAGTGATGCGTCTCTCGACCTGTCCACTGAACGCACGGAATGGCAGCGACGTCGACCTCCAGATCCACCCGCGACACGAATACCGCCGCTTCCCGGCAAAAAACTCATATTAGAAACATACCAGAGTGAAACTCAAGCTAGCTCACCGCGTTCATCGCAAACGGACACGCGTTCTATACAGCAAACGACAGAAGAATTTCCTCGAGCTGAATATTTGCCGAAAAAGATGCGTGCCGCCGAAATGTCCGGTGGAAAATTAGCAGCAGCACGGCAGGCAGTAGTTGGAGTCGAGCAGACATCTTCATCAAGTACAACTAGCGCTGATACATCAATACGCTCAGAGGTTGCTTTTTTAGAGGATCCAAAAAACTTAACGAACCGGTCCACAAGCACCGCCGCGGCGCTGGCCCGGGAGGAACAAGAGGCGGCGAGTCCGACACAGTCGGTGAAGGCTCCGACGCCTAAGAATGATCGCACGAAAATGCGAAAGCCCTTTGATCGAACGAAGCGACTGTCTCCAGATAAAGCAGACCAATATGAAAGACCTGTGACGCCCGATTCTTACTGTGGTTTAGatggtataaatattaaaacggGAGTGATATGTGAGGAGAAACATTCGGAAATATTTAATCGCGAACGTGTGATTAGCATCTGTAATATCGATAAGCACGACTTAGATGACTATCTTAACGAAGGTAATAGTCAAGAACATGAAGAGGAGCTGTTGCAATATTTTCATCAGCGCGGAAATGCAAATGAAGCGCCCGATAACTCGAACCCTACAGGAAATCCTAAAACTTTTTTAGATCCAAGCCAGGACCCACACGACGATCACAGTCAAGGCAAGAGTGAAAAGCTGTCCCAGCTAAGAGAACTACTagctaaaaatctaaaaaatcaAAGTGGGTCCAGTTCTATCTCTCAAAATGTATTAAGCAACCAAGAAACACATTTAGTCCTTGCTAACGAACATCAACCGGAATTGAATAAAGGCGTATCAGAAGGAGCCTTTAAACCGTTAAATAATTTGATAGAAGCAGTGAAGGGTTCTAACATACCGAATCCACATGACAATAACAAAAATACTCACATGATGCCCAATGAAAACGGAATGTCTGTACCAGAAACTACACAAACTTTACTGAATTCAATAGGACCAACACAGCTTTACAATGGTACAATCAACAATGAACCGCAGAGTCCGACTACTAGAACTCAACAATATGATTTTGTACCTATATCGGATGGATGCCATTCACCTGGAAACGTCAGATCTAAATCACCTACGGGACTTGGCCTTAGAGGTAATAGTCCGTCGAAATCTTTAAAACTCGGTGTTCTATGTGGCTCATTACAGACGTCGCCAACATCACATAGCACAGCAGCTAGCCCGTTTGTAAGCCCCAGAAATACGCCCGTACCGAGATCACGTCTTTTTCCACGGCCCATACCCAAACATAATGAAAAAAGGAAGCGCAACACACTTTCACTTGGCATGAACGAAGCGTGCCCGAAACCTTTTGCAATACCCAACGACCAGAAATATATACCTAGAACGACGATATGTAGctctaatattaaatattgtcaaCCCATGTCCGCGCCACCTTCGCCAAATATACTCTCAAATTATAAACATCAGATTATGCAGAACCCCGGAATCACAAACGGTTCAGGCCACATGAGTCTAAATTTTGTGCCAAATTTGTTTCGTGAAAACGCTAACGGTGAATTGACACAGCCTTTATCAGCTGATCCTCTATCGAGTGAAGTGAGTCAATTTTTCCAGGAACCTATGGTAAACTACAGATTACACGATGTATCGTTTAGGTCGCAGTCAGTGCCCTTAAAACAAGCCACATTAAATGTGGGTTTATTGAGCTATAATAATACACCCGTCGGCTCTGTGCCTCCGACCCCAGTGCCAAACGAATTTAGCGATTTTGGATCGCTCGCAGACGCATGTGATATTTCAAAAGCTGGCCTAAATCCTGAAACATTAGATAAAATTTACGACGCAATCGATAGTAGCAATGACGTACTTAATACTGCCGCATCAACGAATCTTCTCAATCCAAACGAAACTATAACTAACGGGTGCGACCCTTTGCCGGAACAGCAGATACTTACGGATGAAcaaattaattcttttatacctTCAAATAACGATCTGCTCGACAGAAACAGTCAATTTAATGATTCGTTTACCAGTGATGGAGCCACCACAGACAACGTCGAGGAGTTCCTTAAACGAACTAATAGCATCGAATTCGATCTGTCAGACTTGGTaacggaaaaaaataaatattatacttcaAGATCAGTTCCTAGCACCCCTCTACCTTATAAACGAACTGCTCCTAATTTGCAGATCGACTCACGACGTTCGAGAGAATTGTTTACAAACTATACTAATGTGTGTAACGGGATATCCTCAAAATCAGTGCCATCGACTCCACAGCTCGCTGAAGACAGGAGTGTTTTCAGCTACAGTAATAGAGACTTTCTCATCAACGGGAATTCTGTTGAAATGTGTGGATCAAATCAAATGTCTTCTGTAGTAGAGAGTGATCAAACGCTAACGTCCCCGTTGGACATGCTACGTGAGGATATGCTGGAACCTCTGTCCGGACCCACCGCTGATTTGCTGGCAGACTTTGACAAAATAGACGGTCCCCCGTACGTTGTTGACCTCTAG
- Protein Sequence
- MDRTSPFQPCATDDNSKNVKTEGEIVDDTKLHRENVNHPKHRQTASYDKESVVPSSIVPGPSSETSTGSIPANTKESKMDSSKIASMQQIVENTLSQEGRQRVSQLLEAVEALSGAERLLLYLRLPTGVPPHDPLKQPVNPLGSRAELQQTVTWIQTHLEVDPDVSLPKQDVYDEYISHCMSCNMKPLSTADFGKVMKQVYPTVRPRRLGTRGNSRYCYAGLRKKVKLEVPHLPDLGESSKEFNVASRESERIVCDWAEIKLGVKFSTILELSRHLASLSTTQRAPPGPASASPPHAPMHGATDEAPGPQLIKQLKRKLQTTGTPGRPKKNKGQETSGVSPPSTSYVQHTPLKHESEITSEASYGYQPAYVPVYDVRPSFSYTAPPHAHPPHVPSTPHPAISVHEYRPDPYVFDPPYAPRDLTIPTDTTLNLPINLSSDASLDLSTERTEWQRRRPPDPPATRIPPLPGKKLILETYQSETQASSPRSSQTDTRSIQQTTEEFPRAEYLPKKMRAAEMSGGKLAAARQAVVGVEQTSSSSTTSADTSIRSEVAFLEDPKNLTNRSTSTAAALAREEQEAASPTQSVKAPTPKNDRTKMRKPFDRTKRLSPDKADQYERPVTPDSYCGLDGINIKTGVICEEKHSEIFNRERVISICNIDKHDLDDYLNEGNSQEHEEELLQYFHQRGNANEAPDNSNPTGNPKTFLDPSQDPHDDHSQGKSEKLSQLRELLAKNLKNQSGSSSISQNVLSNQETHLVLANEHQPELNKGVSEGAFKPLNNLIEAVKGSNIPNPHDNNKNTHMMPNENGMSVPETTQTLLNSIGPTQLYNGTINNEPQSPTTRTQQYDFVPISDGCHSPGNVRSKSPTGLGLRGNSPSKSLKLGVLCGSLQTSPTSHSTAASPFVSPRNTPVPRSRLFPRPIPKHNEKRKRNTLSLGMNEACPKPFAIPNDQKYIPRTTICSSNIKYCQPMSAPPSPNILSNYKHQIMQNPGITNGSGHMSLNFVPNLFRENANGELTQPLSADPLSSEVSQFFQEPMVNYRLHDVSFRSQSVPLKQATLNVGLLSYNNTPVGSVPPTPVPNEFSDFGSLADACDISKAGLNPETLDKIYDAIDSSNDVLNTAASTNLLNPNETITNGCDPLPEQQILTDEQINSFIPSNNDLLDRNSQFNDSFTSDGATTDNVEEFLKRTNSIEFDLSDLVTEKNKYYTSRSVPSTPLPYKRTAPNLQIDSRRSRELFTNYTNVCNGISSKSVPSTPQLAEDRSVFSYSNRDFLINGNSVEMCGSNQMSSVVESDQTLTSPLDMLREDMLEPLSGPTADLLADFDKIDGPPYVVDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00288599;
- 90% Identity
- iTF_00925469;
- 80% Identity
- -