Cfun001887.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- -
- Assembly
- GCA_900474305.1
- Location
- UCOJ01000100.1:153457-157940[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.36 31 5.4 0.7 1 15 741 755 741 763 0.78 2 15 0.53 45 4.9 1.0 2 23 796 817 795 817 0.95 3 15 0.0012 0.1 13.2 1.6 3 23 826 847 825 847 0.97 4 15 0.0053 0.44 11.2 2.7 1 23 854 877 854 877 0.96 5 15 0.00031 0.026 15.0 1.1 1 23 883 906 883 906 0.94 6 15 9.3e-07 7.8e-05 23.0 1.2 2 23 940 961 939 961 0.97 7 15 2.3e-06 0.00019 21.8 0.3 1 23 967 989 967 989 0.99 8 15 0.0021 0.18 12.4 3.2 2 23 1001 1023 1000 1023 0.95 9 15 0.019 1.6 9.5 1.5 1 23 1029 1052 1029 1052 0.94 10 15 0.12 10 6.9 4.8 2 23 1073 1095 1072 1095 0.93 11 15 0.002 0.17 12.5 1.3 2 23 1102 1124 1101 1124 0.96 12 15 0.00032 0.027 15.0 3.5 3 23 1133 1153 1131 1153 0.96 13 15 0.0021 0.18 12.4 1.3 1 23 1159 1182 1159 1182 0.96 14 15 1.3 1.1e+02 3.7 4.1 2 23 1189 1210 1188 1210 0.96 15 15 0.0053 0.45 11.2 2.8 1 23 1216 1238 1216 1238 0.98
Sequence Information
- Coding Sequence
- ATGAGTATCAACAGTTCTTTGTCCATGGATTTTGAGGAGTGCGATAATGCTATCATCGATGGCACGAGTACTGCTAGTCAAAGTTCAGCTTTGTATGAGAAGGAAAAGCACGACAATGACAAATCCGAGGGGGACTTGGATATACTGGAAGGGGATTTGGAGATAGGCACAGGTGCTGTATCAACTactaaaaaaacaaATGTTCGGGAGGCAATGGCAATGAAGCAGATCTACTTATCTGATAATGAGGATCATAATTACACTGATACACAAACAGAAAATTCAAACACAGGCTTCACAAGtaactttatatattcaaaagtgGCAAATtctggaaaagaaaagtttattggattgaaaataacaaatctGAATGATTTGAAGAAAGCTATACCTCGGTTAAAGCTGCCAACAATCTTGTCATCAGCATCATCGTTGCCATCATCAACcgttaaaaaaacaacagcttTGCCTTTAGAAGTTAAACAGAAATTACACAAATATTGTCGTACCTGTGCTGGTTTGAAAGTTCCATTGGTTAACATATTCAGTGAGAAAGGAACTCAAATGCGACTAGCTCAGCAAATGCGACACCTAGAAGACATAAATGAATATGATAGTTTGTCTACACAAATGTGTATGGACTGTATTTGTGATATGAGAATGAGTTATAAATTCTTCATGCAAATCAAAAAagctgaaataaaattgaaatccaTTTGCAATTCATTTAATGATTCTTCATCCAAAACATCTCAAGATAATGAAATTACTGATGTTCTTGTGAAGAAAGAAACATTGGTGAAAAATAGCAATTATGAAGTTTCGGATACTGAAGGGATTAAAAGTGAATCCGAAGATATTGATTGTACTGAAATAAATGACAGTTGTAGTATTGGAAACGATTCTTTTGAAGAATTTGATCCTGAAAATTCTAACTGTACGGATGAagctgatttaaaaaaaatcacagaatCTGATATTGAATTGGGTAAGAGCACAGAATCTAAAATGGATACTGATAAAACTACAAAATCTAGGATTGATTCAAATAACCTGATGGAATCTGAAACTGATTTAGGAAAAGAATCTGAAACTGATTTAGGCAAAGAATCTGAAACTGATTTAGGCAAAGAATCTGAAACTGATTTAGGCAAAGAATCTGAAATGATTATACAAGATGATGTGGATAAGCAGAATGGTTTAGTGTATGAATACAATAAGAGTTTAAATGCATACGTCAAAATTGAGACTTCTGAAAAAGCCCAAGAAGATAACGAacctgaaaataaattaatagaatGTACTAAAAATGCTTCGCCAACTTTAGAATCCTTCAGTCTATCAACAAAATCACCTATTATCTTGAAGAGAAAATTATCCAGTGGAAATTCAAGTGACGATAGTACtgataaacataataaaatagattttcaGAAGttgaaagatttaaaaattccaaagttAGATCTTCAAGATTCTACAAAAATCAAGACAGAAGAAGATGGAGTAATGTATGTTACTGCTAAAGGCTCTAAACCTAATGAAGTGCtcttaataaaagtaaaaaaaatgaacaagcCAAGTGAAAAGAAGGTAGAAAAATCACTTAGTAAAAAGAAAGGGGATACAATTTCttatcaaaaattacaatcaagATTTGAATATACAAATAAGAAGGGTTCTATTGATGAACAAATAGAAcaatataagaagaaaagagtTCAAATTTTAGGGGAAGATGCAAATATGACAGAAATGGATTTTGATGAGGACCTAGAAGCTAAAGTTGTAAGTGGAGATGCTTCGACTGATGTAGAAATTTTAGAGCAGGAGGACGAAATAGAAAACAGAGAAGAATATGTAGATACAGATGATATagaattttctgaaatacCGACTTTTACATCTAAGCAATCAGCTCAGTTGGAAAAAATGCAACAGCGCTGGaaagatattaaaaagagacatgaaactataaataaagatttagCAGAAGACTGCACAGATAGATTAAAATCTCTTCTAAGGCAAAAAGATGAAGATATACAAGaatttattagttatttaaaacaaCGGAGAATCGTCGTGTCACGTTTAAAAGATGAACATATAATTTCACTTTACGAGgccaaaaataatgtaattttggAAAGGTTGCCTGTACAACTTTTGGGTACGTCACAGGAAGAAATAGATCCTTTTGAATTCAAAGAAACTTTCGATTGTGACTTTTGCGATCAATCTTTTCCCAACAGGGACATGGAATATGAACATTCGAAAATTcacgattttaaattaatgcaTTACTGTGAAGATTGTCAACAAGAATTTCTAACTCATAAGGGAAAGCGCAGTCACAATATCACTTGTGTACAGAAGCTAATGTGCAAATACTGTGATATGATACTAGAGTCTAAAGGAAAGAAAAGGCAGCACGAACAAAAACACTGTGATGAGCAAAATGGTCAGCTTTGTGACCTATGTGGTGAGAAATTCAAACATCAGGGTACCTTAGATCAGCATGTGAAATCTCGACACATGCAGctggaaaaaatttacaaatgtcCACAGTGCTCAAAGAGATTTGCCTTCAGGACGAAACTGACTTTCCACTTAAAATCAGTTCACACTACAAGCAGACCTTACTTGTGTGAAGACTGTGGGTCAGACTTCAAAAATCCCGCAAGTCTTAGACATCATAGAATACGGAAGCATCAGCCAACAAATAACAAGAAGGAATGTACTGTTTGTCACAAAATGATTCCGGTCTACAGTATGTCCAAGCATATGCACACTCACAAGGCCTACACAATCCAATGTCCTCGATGCGATAAGATGTTCAAGAATACATCAACTCTGAAGCAGCACTTAAGGATCCACGAAGATCAACGCCAATACAAGTGCGACATGTGCGGCGTTGGTTTTAACAGACGAGACGGCCTAAAGTTGCACATGAAAGTTCACACAAAGGTGGATAGCAGGGGTCTGAAAGAATGTTCGTGCCAGCTTTGTGGCGAGAAGTTCCCCAATCACTCGATGCTCGTCATCCACAGGAATCGTACTCACAAAGACGGTCGAAACTACACTTGTCATATATGCAACAGATCTATGATCTCCACACGATCGCTAGAGTGGCATTTGGCGCACATACACAATGAAACGATGCCAGGCATCGTCAATGAATCCAGCGTCGATGCCGAAACCAAACGAGTGTCTTGCTACCATTGCCACAAGACTTTCAAGACAGAGATGATCCTGAGAACGCATGTAAAGAACACGCATGTGGAAAAGGAACCCATGAAATGTCTGGACTGCGAACTGAAGTTTACGTCCGAAGTTCGACTAAAGCACCACATGATGATCGAGCATAATCGTTTGGAGGGAACCCTCGCCTGTCATCACTGTCCCAAGAGGTTTGTCAACCAACTGAGACTGAAGACGCACATGATATCACACTCGGATCAACGGCCGTTCACCTGCGACCTGTGTGGCTTTATGTTAAAGACGAAAATCCAACTAATCAAGCACAAACAGAACAGACACAGCAACGAGCGACCACTGCAGTGCAGGTACTGCTCGTGGAGGTGCAAGCAAGTCAGCGCGCTGGTTTGTCACGAAAGAACCCACACGAACGAGAGGCCTTACAGTTGCAGTGTGTGCAAGCAGAAGTTTAAGTACCTGGGCGATAAGAACAAGCACGAGAGACGGCACGAGAGCCTTGGCGGTTCTGGGTTTAAGAGAATCGTTACTGGAAGAAATACGAACAAGATTCTCGGGAAAAAAGAGCCAAATTCACAAGAGCAGGATTCCGAAATGGAGCACGAGGAGTACGATATTGAGCAACAAGAGGATGAAGAATACGAAGAACAGGTTGAGGGACATATCGAAACTTTTGATGAAACGCAAATCATTAAATTCGATGATAAtggagaaataataaatgaaggATCTGAAGAATCTTATGAGCAGaTGTACGTAGAGGATGCATCACAAGATGTAAGTGACTCGAGTAAAGTCGTAATAGGTATGGAAGACGCCACAGTTTATACGGAAGAAGTTACAGCGGATCAGATTGAACCAGAAATGATCGccagtaatataataaacgagcACATGTTGCAACCAGGAACTGTAGTCCATCTCCAGCAACAAGACGAAACGGGAAAGATTCAAGTTATACCAGTCATGTTGTCATTGCCAGACCTCTCGGATACCAGTACTGAAGTTAATTTAGCAACCGCCTCTATAATCTATAATAACTAA
- Protein Sequence
- MSINSSLSMDFEECDNAIIDGTSTASQSSALYEKEKHDNDKSEGDLDILEGDLEIGTGAVSTTKKTNVREAMAMKQIYLSDNEDHNYTDTQTENSNTGFTSNFIYSKVANSGKEKFIGLKITNLNDLKKAIPRLKLPTILSSASSLPSSTVKKTTALPLEVKQKLHKYCRTCAGLKVPLVNIFSEKGTQMRLAQQMRHLEDINEYDSLSTQMCMDCICDMRMSYKFFMQIKKAEIKLKSICNSFNDSSSKTSQDNEITDVLVKKETLVKNSNYEVSDTEGIKSESEDIDCTEINDSCSIGNDSFEEFDPENSNCTDEADLKKITESDIELGKSTESKMDTDKTTKSRIDSNNLMESETDLGKESETDLGKESETDLGKESETDLGKESEMIIQDDVDKQNGLVYEYNKSLNAYVKIETSEKAQEDNEPENKLIECTKNASPTLESFSLSTKSPIILKRKLSSGNSSDDSTDKHNKIDFQKLKDLKIPKLDLQDSTKIKTEEDGVMYVTAKGSKPNEVLLIKVKKMNKPSEKKVEKSLSKKKGDTISYQKLQSRFEYTNKKGSIDEQIEQYKKKRVQILGEDANMTEMDFDEDLEAKVVSGDASTDVEILEQEDEIENREEYVDTDDIEFSEIPTFTSKQSAQLEKMQQRWKDIKKRHETINKDLAEDCTDRLKSLLRQKDEDIQEFISYLKQRRIVVSRLKDEHIISLYEAKNNVILERLPVQLLGTSQEEIDPFEFKETFDCDFCDQSFPNRDMEYEHSKIHDFKLMHYCEDCQQEFLTHKGKRSHNITCVQKLMCKYCDMILESKGKKRQHEQKHCDEQNGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIYKCPQCSKRFAFRTKLTFHLKSVHTTSRPYLCEDCGSDFKNPASLRHHRIRKHQPTNNKKECTVCHKMIPVYSMSKHMHTHKAYTIQCPRCDKMFKNTSTLKQHLRIHEDQRQYKCDMCGVGFNRRDGLKLHMKVHTKVDSRGLKECSCQLCGEKFPNHSMLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLAHIHNETMPGIVNESSVDAETKRVSCYHCHKTFKTEMILRTHVKNTHVEKEPMKCLDCELKFTSEVRLKHHMMIEHNRLEGTLACHHCPKRFVNQLRLKTHMISHSDQRPFTCDLCGFMLKTKIQLIKHKQNRHSNERPLQCRYCSWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHERRHESLGGSGFKRIVTGRNTNKILGKKEPNSQEQDSEMEHEEYDIEQQEDEEYEEQVEGHIETFDETQIIKFDDNGEIINEGSEESYEQMYVEDASQDVSDSSKVVIGMEDATVYTEEVTADQIEPEMIASNIINEHMLQPGTVVHLQQQDETGKIQVIPVMLSLPDLSDTSTEVNLATASIIYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00287517; iTF_01037282; iTF_01035686; iTF_01274764; iTF_01036494; iTF_01487264; iTF_00144073; iTF_01190688;
- 90% Identity
- -
- 80% Identity
- -