Basic Information

Insect: Apocrypta bakeri
Gene Symbol: gtf3a
Assembly: GCA_018906985.1
Location: JACCIA010000012.1:3650437-3654657[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.31 22 5.5 0.7 1 15 621 635 621 643 0.78

2 15 0.46 33 5.0 1.0 2 23 676 697 675 697 0.95

3 15 0.0011 0.076 13.3 1.6 3 23 706 727 705 727 0.97

4 15 0.0053 0.38 11.1 2.2 1 23 734 757 734 757 0.97

5 15 0.00027 0.019 15.2 1.1 1 23 763 786 763 786 0.94

6 15 1.6e-07 1.2e-05 25.3 2.3 2 23 820 841 819 841 0.97

7 15 2.1e-06 0.00015 21.8 0.2 1 23 847 869 847 869 0.99

8 15 0.0005 0.036 14.3 2.9 2 23 881 903 880 903 0.95

9 15 0.016 1.2 9.6 1.5 1 23 909 932 909 932 0.94

10 15 0.015 1.1 9.7 2.5 2 23 954 976 953 976 0.93

11 15 0.0016 0.11 12.8 1.0 2 23 983 1005 982 1005 0.96

12 15 4.7e-05 0.0034 17.5 1.0 3 23 1014 1034 1012 1034 0.96

13 15 0.0018 0.13 12.5 1.3 1 23 1040 1063 1040 1063 0.96

14 15 1.1 79 3.8 4.1 2 23 1070 1091 1069 1091 0.96

15 15 0.0046 0.33 11.3 2.8 1 23 1097 1119 1097 1119 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.31	22	5.5	0.7	1	15	621	635	621	643	0.78
2	15	0.46	33	5.0	1.0	2	23	676	697	675	697	0.95
3	15	0.0011	0.076	13.3	1.6	3	23	706	727	705	727	0.97
4	15	0.0053	0.38	11.1	2.2	1	23	734	757	734	757	0.97
5	15	0.00027	0.019	15.2	1.1	1	23	763	786	763	786	0.94
6	15	1.6e-07	1.2e-05	25.3	2.3	2	23	820	841	819	841	0.97
7	15	2.1e-06	0.00015	21.8	0.2	1	23	847	869	847	869	0.99
8	15	0.0005	0.036	14.3	2.9	2	23	881	903	880	903	0.95
9	15	0.016	1.2	9.6	1.5	1	23	909	932	909	932	0.94
10	15	0.015	1.1	9.7	2.5	2	23	954	976	953	976	0.93
11	15	0.0016	0.11	12.8	1.0	2	23	983	1005	982	1005	0.96
12	15	4.7e-05	0.0034	17.5	1.0	3	23	1014	1034	1012	1034	0.96
13	15	0.0018	0.13	12.5	1.3	1	23	1040	1063	1040	1063	0.96
14	15	1.1	79	3.8	4.1	2	23	1070	1091	1069	1091	0.96
15	15	0.0046	0.33	11.3	2.8	1	23	1097	1119	1097	1119	0.98

Sequence Information

Coding Sequence: ATGAAGAAAATCAACTTATCTGATAATGAGGATCATAATTACACTGATATACAAATAGAAAAACAAGTGAATTCGAATACAGGCTTTGCAAGTAACTTTATATATTCAAAAGTGGCAAATTCTGGAAAAGAAAAATACATTGGATTAAAGATCACAAATCTAAATGATTTAAAAAAAGCTATTCCACGTTTAAAGTTGCCAACAATTCTATCATCAGCATCATCCTCAACAAAATCTATTAAAAAAACTACAGCAGTATCTTCAGAAGTTAAACAGAAATTACACAGGTATTGTCGAACTTGTGCTGGCTTGAAAGTTCCATTAGTTAATATCTTTAGCGAAAAAGGAGCTCAAATGAGATTAGCGCAACAAATTCGACATTTGGAAGACATAAATGAATTTGATAGCTTATCTACTCAAATGTGTATGGATTGCATTTGTGATATGAGGATGAGTTATAAATTTTTCATGCAAATTAAAAAAGCTGAAATAAAATTAAAATCGATTTGCAATTCATTTACTGATTCTGTGTGCAAAATATCCCATGATGATGACTTAAATGAGGTGAAAAAAGAATTCTTGTCAGAAAATAGTGAATCTGAAGATATAAATATCAAAGGGATTAAGAGTGAAGTTGAAGATAATGATTATGCTGAAATGAATGATAGTTGCAGTGTTGGTAATGCTTCTTTTGAAGAATTTGATCCTGAAAATCCTAACTACAACGATGAAACTGATTTTAAAAAGTCTATAGAATCTGATATTGATTTAGGTAAGAGCACAGAATCAACTGTTGCTACTAGCAAACGTACAAAATCAATTGATTTGAATAATGTTGTAACACAATCAGAAATTGACTTAGGTAAAGAATTAGAATCTGAAACTATTTCACAAGAAGACATAGATAAACAAGATAATTCTGTGTATCAATACGATGAGTGTTTAAATGCTTATGTTAAAGTTGAGCCTTCTGAAGAAAAATCATTGAATATATCAAACAAATTACCAAATATATTAAAGAGAAAATTATCTACTGAAAATGCAAGTGATGATAGCATTGATAAGTGTAATAAAATAGATTTTCAGAAATTAAAAGATTTGAAAATACCAAAATTAGATCTTCAAGATTCTACAAAAATCAAGACTGAAGAAGATGGGATTATGTACGTCACTGCTAAAGGTTCTAAACCCAATGAAGTGCTCTTAATAAAAGTTAAAAGAATGAACAAACCTAATGAGAAAAAAACAGAAAAATCACTTACGAAGAAAAAGGCAGATTTGTTTCACAAAACAGGTTACAAAATGGATAATACGAAAAAGGATAATTCTATTGATGAGCAAATAGAACAATATAAAAAGAAAAGAGTTCAAATTCTAGGAGAAACTGCTAGTATGACAGAAATGGATTTTGATGAGGATTTAGAAGCTAGAGTTATAGGTGGAGAATCTCTAACTGATATAGAAACATTTGAACCTGACGATGAAGTAGAAAACAAAGAAGAAGAATATTTAGAGGAAGTAGAATTGTCTGAAAAACCTGCTTTCTCATCACAACATTCAGCTCAGTTGGATAGAATGCAACAACGTTGGAAAGATATTAAAAAAAGACATGAAACTATTAATAAAGATTTAGCAGAAGACTGCTCAGATAGATTAAAATCTATTTTAAGACAAAAAGATGAACATATCCAAGAATTCATCTCTTACTTAAAACAACGAAGAATCGTTGTATCACGATTAAAAGATGAACATATAATTTCACTATACGAAGCAAAAAATAATGTAGTGTTAGAAAGAATGCCAACAGAATCATTTGACACGTTTCAGGAGGAAATAGATCCTTTTGAATATAAAGAAACTTTTGATTGTGATTTTTGCGATCAATCTTTTCCCAACCGAGATATGGAATACGAACATTCAAAAATTCATGATTTTAAATTAATGCATTACTGCGAAGATTGTCAACAAGAATTTTTAACACATAAAGGAAAGCGCAGTCATAACATAACTTGTGTACAAAAACTAATGTGTAAATACTGTGATATGATACTGGAGTCTAAAGGAAAGAAAAGGCAACATGAGCAGAAACACTGTGATGAGCAAAATGGTCAACTTTGTGATCTATGTGGAGAGAAATTCAAACATCAAGGTACATTAGATCAGCATGTAAAGTCTCGACATATGCAGTTAGAAAAAATTTTCAAATGTCCTCAGTGTTCAAAAAGATTTGCCCTTAGGACAAAATTAACTTTCCACTTGAAAACAGTTCATACCACTAGTAGACCTTATTTATGCGAAGATTGTGGATCAGATTTTAAAAATCCTGCCAGTCTTAGACACCATAGAATTCGAAAGCATCAGCCAACAAATAATAAGAAAGAATGTATAGTTTGCCACAAGTTAATTCCAGTTTATAGCATGTCCAAGCATATGCATACTCACAAAGCTTATACAATTCAATGTCCACATTGTGATAAGATGTTTAAGAATACATCAACTTTGAAACAGCACATAAGGATCCACGAAGATCAACGTCAATACAAATGCGACATGTGCGGTGTTGGTTTCAATAGAAGAGATGGTCTGAGGTTACATATGAAGGTACACCAGAAAGCTGATAGTAGAGGTCTTAAAGAATGCTCCTGTCAGATTTGCGGTGAAAAATTCCCCAATCATTCAATGCTGGTTATCCACAGAAATCGCACTCATAAAGACGGTCGGAATTATACGTGTCACATATGTAACAGATCTATGATCTCCACTCGATCACTAGAGTGGCATTTAGCTCATATACATAACGAAACGATGCCGGGTATTGTCAAAGATGAATCCAGTGTTGACGTCGAGACCAAGAGAGTATCTTGCTATCACTGTGATAAAACTTTCAAAACTGAAATGATCTTAAGAACACATGTAAAAAATACACATGTCGAAAAAGAGCCAATGCAATGTTTGGATTGTGAATTGAAATTTACATCTGAAGTTCGATTAAAACATCACATGATGATAGAGCACAATCGGTTGGAAGGAACTCTCGCTTGTCCTCATTGTCCCAAGAGGTTCGTCAATCAACTGAGGCTAAAAACACATATGATATCGCACTCAGATGAACGCCCATTCACTTGCGACCTGTGTGGCTTTATGTTGAAGACGAAAATTCAACTAATCAAGCATAAACAGAATAGACATAGCAATGAGCGACCGCTGCAGTGTAGGTACTGCTCATGGAGGTGCAAGCAAGTTAGTGCATTGGTTTGTCACGAAAGAACCCACACAAATGAAAGACCTTATAGTTGTAGTGTGTGCAAGCAGAAGTTCAAATACCTGGGTGATAAGAACAAGCATGAAAGAAGGCATGAAAGTCTTGGAGGCTCTGGATTTAAGAGAATTGTTACTGGAAGAAATACAAATAAGATTATCCGACAAAAAGATCAAAATTCACAAGAGCACGATTCTGAAATGGATCAAGAGGAGTACGAGCAGCAAGAGGAAGAAGAATATGAAGAGCAGGTTGAGGGAGAAGTTGAAGGTTTTGATGAGACTCAAATTATTAAATTTGATGAAAATGGAGAAATAATAAATGAAGGGTCTGAAGAGTCATATGAACGGGTCTACGTAGAGGAAACATCACAAGATGCAAGTGATGCGGCTAAAATCGTGATAGGTATGGAAGAAGGTACAGTTTACACGGAAGAAGTAACAGCAGATCATCTGGAATCAGAAATGATCACTACTAACATAATAAATGAGCACATGCTGCAACCAGGAACTGTAGTTCATCTCCAGCAACAAGATGAAACTGGAAAGATTCAAGTGATACCAGTTATGCTGTCTTTGCCAGATCTATCAGATGCCTCTGCTGAAGTTAATTTGGCAACTACTTCTATAATGTATAATAACTAA
Protein Sequence: MKKINLSDNEDHNYTDIQIEKQVNSNTGFASNFIYSKVANSGKEKYIGLKITNLNDLKKAIPRLKLPTILSSASSSTKSIKKTTAVSSEVKQKLHRYCRTCAGLKVPLVNIFSEKGAQMRLAQQIRHLEDINEFDSLSTQMCMDCICDMRMSYKFFMQIKKAEIKLKSICNSFTDSVCKISHDDDLNEVKKEFLSENSESEDINIKGIKSEVEDNDYAEMNDSCSVGNASFEEFDPENPNYNDETDFKKSIESDIDLGKSTESTVATSKRTKSIDLNNVVTQSEIDLGKELESETISQEDIDKQDNSVYQYDECLNAYVKVEPSEEKSLNISNKLPNILKRKLSTENASDDSIDKCNKIDFQKLKDLKIPKLDLQDSTKIKTEEDGIMYVTAKGSKPNEVLLIKVKRMNKPNEKKTEKSLTKKKADLFHKTGYKMDNTKKDNSIDEQIEQYKKKRVQILGETASMTEMDFDEDLEARVIGGESLTDIETFEPDDEVENKEEEYLEEVELSEKPAFSSQHSAQLDRMQQRWKDIKKRHETINKDLAEDCSDRLKSILRQKDEHIQEFISYLKQRRIVVSRLKDEHIISLYEAKNNVVLERMPTESFDTFQEEIDPFEYKETFDCDFCDQSFPNRDMEYEHSKIHDFKLMHYCEDCQQEFLTHKGKRSHNITCVQKLMCKYCDMILESKGKKRQHEQKHCDEQNGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIFKCPQCSKRFALRTKLTFHLKTVHTTSRPYLCEDCGSDFKNPASLRHHRIRKHQPTNNKKECIVCHKLIPVYSMSKHMHTHKAYTIQCPHCDKMFKNTSTLKQHIRIHEDQRQYKCDMCGVGFNRRDGLRLHMKVHQKADSRGLKECSCQICGEKFPNHSMLVIHRNRTHKDGRNYTCHICNRSMISTRSLEWHLAHIHNETMPGIVKDESSVDVETKRVSCYHCDKTFKTEMILRTHVKNTHVEKEPMQCLDCELKFTSEVRLKHHMMIEHNRLEGTLACPHCPKRFVNQLRLKTHMISHSDERPFTCDLCGFMLKTKIQLIKHKQNRHSNERPLQCRYCSWRCKQVSALVCHERTHTNERPYSCSVCKQKFKYLGDKNKHERRHESLGGSGFKRIVTGRNTNKIIRQKDQNSQEHDSEMDQEEYEQQEEEEYEEQVEGEVEGFDETQIIKFDENGEIINEGSEESYERVYVEETSQDASDAAKIVIGMEEGTVYTEEVTADHLESEMITTNIINEHMLQPGTVVHLQQQDETGKIQVIPVMLSLPDLSDASAEVNLATTSIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00286693;
90% Identity: -
80% Identity: -