Csub000160.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- -
- Assembly
- GCA_011634745.1
- Location
- JAABKK010024447.1:1-779[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-13 1.7e-09 37.9 0.0 1 39 45 84 45 88 0.90 2 4 4.4e-14 9.6e-11 41.8 0.1 1 39 99 137 99 140 0.94 3 4 1.2e-18 2.6e-15 56.4 0.0 1 45 154 199 154 199 0.97 4 4 2.8e-18 6.1e-15 55.3 0.0 1 43 206 249 206 250 0.96
Sequence Information
- Coding Sequence
- ATGTACAATTCTGAGTCCAGTGAGGATTCAAGATTGAATTTGAATGGATCACCATCAGAGGGTACATCACCACAATATACAACACTAACATctcaaaatgagaaaaatgcgCAAGGCGGTCCTAAGACATGGACACAAGAGGATATGGATTCAGCTCTAGATGCACTTCGTAATCATAATATGAGTTTGACAAAAGCTTCCATTACATATGGTATTCCATCGACAACATTGTGGCAACGAGCTCACCGATTAGGCATTGATACACCGAAAAAAGAAGGACCAACGAAGTCGTGGAGTGAGGATTCTTTAAATAATGCTCTGGATGCGTTACGAACAGGACAGATATCAGCAAATAAAGCATCGAAAGCTTATGGTATTCCATCATCGACTTTGTATAAAATTGCAAGACGAGAAGGTATCCGTTTGGCAGCGCCATTTAATGCAGCACCAACAACATGGTCGCCAGAAGACTTAGAGCGGGCTTTGGAAGCTATTCGAGGTGGTCATACGTCCGTTCAAAAAGCAAGCACTGAGTTTGGAATTCCAACAGGAACACTTTATGGTCGTTGCAAACGAGAAGGAATCGAGTTATCTCGATCAAATCCAACACCATGGTCGGAGGATGCGATGATGGAAGCGTTAGACGCTGTTAGGATAGGACATATGTCCATTAATCAAGCTGCCATACATTATAATTTGCCATACAGTTCATTATACGGTCGCTTTAAACGTGGTAAATACGACACAGCCGGTGCGGACAACTTAAATCAAACACAAAT
- Protein Sequence
- MYNSESSEDSRLNLNGSPSEGTSPQYTTLTSQNEKNAQGGPKTWTQEDMDSALDALRNHNMSLTKASITYGIPSTTLWQRAHRLGIDTPKKEGPTKSWSEDSLNNALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPEDLERALEAIRGGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALDAVRIGHMSINQAAIHYNLPYSSLYGRFKRGKYDTAGADNLNQTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01368932; iTF_00436383; iTF_00436384;
- 90% Identity
- -
- 80% Identity
- -