Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.5e-10 3.4e-08 35.8 0.0 1 39 101 140 101 144 0.90

2 4 1.1e-11 2.4e-09 39.4 0.1 1 39 155 193 155 196 0.95

3 4 1.4e-17 3.1e-15 58.3 0.0 1 45 210 255 210 255 0.98

4 4 1.8e-15 4.2e-13 51.5 0.0 1 39 262 301 262 305 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.5e-10	3.4e-08	35.8	0.0	1	39	101	140	101	144	0.90
2	4	1.1e-11	2.4e-09	39.4	0.1	1	39	155	193	155	196	0.95
3	4	1.4e-17	3.1e-15	58.3	0.0	1	45	210	255	210	255	0.98
4	4	1.8e-15	4.2e-13	51.5	0.0	1	39	262	301	262	305	0.93

Coding Sequence: ATGGAAGTCCCACGAAGGTTAATAACAGTAGTAAAAGCTCTCTACAAGAATAACACAGTAGCTATCAAAATGGGCAATAGAATgtgcagtccatttaagacgacaaagggaCTACTACAGGGCTGCTCCATATCTCctaccctgttcaaaatattcctggaaaaacaccctgaaaccatggaaaagaaagtacgaaggaatgggtataccaatgtAGGTGATGATGTACCTGGAATGAAAAATAACGGCCATTTAGAATTAGGGCAACAAAGGTCTCACGCTGGGGGACCGAAAACTTGGACACAGGAAGATATGGATATGGCGTTAGATGCCTTACGAAATCACAATATGAGCCTAACTAAGGCATCCGCAACTTATGGTATTCCCTCCACTACTTTATGGCAGAGAGCTCATAGGCTAGGAATAGATACCCCCAAAAAAGAAGGGCCTACTAAATCTTGGACTGAAGAAAATCTAAATAACGCTCTGGAAGCATTAAGAACTGGAACAATATCTGCAAATAAAGCTAGCAAAGCATTTGgCATTCCCAGTAGCACCCTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCTTTCAACGCGGCACCGACTACTTGGACACCTGAAGACTTAGAAAAAGCCTTAGAGTCCATAAGAACGGGCCAGACGTCTGTACAAAAAGCTTCGACAGAATTCGGCATACCCACTGGAACATTATACGGTAGATGCAAAAGGGAAGGAATAGAATTGTCAAGGTCGAATCCTACGCCCTGGTCTGAAGATGCCATGGGAGAAGCTCTAGAGGCCGTTAGGTTAGGTCACATGTCCATCAACCAAGCGGCCATCCACTATAACCTGCCTTATTCCTCGCTGTATGGACGCTTCAAACGAGGCATCAAATACGAGGCGGATACCATAGATTATGTGGATCTAAATCAAGACAGCCACCTCCAAATGGAACATACATTTGGCATGGAATATACTACCTCTCCATCACAGATTCAATATCAAAACCAGAATAGCTGA
Protein Sequence: MEVPRRLITVVKALYKNNTVAIKMGNRMCSPFKTTKGLLQGCSISPTLFKIFLEKHPETMEKKVRRNGYTNVGDDVPGMKNNGHLELGQQRSHAGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYEADTIDYVDLNQDSHLQMEHTFGMEYTTSPSQIQYQNQNS*

Sequence clustering based on sequence similarity using MMseqs2