Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9e-11 1.9e-08 36.1 0.0 1 39 42 81 42 85 0.90

2 4 3.2e-12 6.6e-10 40.8 0.1 1 39 96 134 96 137 0.95

3 4 8.2e-18 1.7e-15 58.7 0.0 1 45 151 196 151 196 0.98

4 4 1.1e-15 2.4e-13 51.8 0.0 1 39 203 242 203 246 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9e-11	1.9e-08	36.1	0.0	1	39	42	81	42	85	0.90
2	4	3.2e-12	6.6e-10	40.8	0.1	1	39	96	134	96	137	0.95
3	4	8.2e-18	1.7e-15	58.7	0.0	1	45	151	196	151	196	0.98
4	4	1.1e-15	2.4e-13	51.8	0.0	1	39	203	242	203	246	0.94

Coding Sequence: ATGTATCTAATGATTACAGATGTAAATAGTAGTGAAGATCATGTACCTGGAACCAAAAATAATGGCCATACCGAAAACTTACAGCACACACCCCGAACACACGGTGGTGGACCAAAAACCTGGACTCAGGAAGATATGGATATGGCCTTGGATGCCTTAAGAAATCACAATATGAGCCTCACAAAGGCTTCAGCGACTTACGGAATTCCCTCCACTACTTTATGGCAAAGAGCGCATAGGCTAGGCATAGATACACCAAAAAAAGAAGGTCCCACAAAGTCTTGGACAGAAGAAAACCTCAATAGTGCCCTTGAAGCTTTGCGAACTGGTACCATTTCGGCGAATAAAGCTAGCAAAGCATATGGTATCCCTAGTAGCACTTTATACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCTTTCAATGCCGCTCCAACCACATGGACGCCTGAAGACTTAGAAAAAGCATTAGAATCAATTAGGACAGGACAAACGTCAGTACAAAAAGCCTCCACAGAGTTTGGTATACCTACTGGAACACTTTATGGGAGGTGTAAAAGAGAAGGTATCGAGCTGTCAAGGTCGAATCCCACTCCCTGGTCGGAGGACGCTATGGGTGAAGCACTGGAGGCTGTAAGacTTGGGCACATGTCCATAAATCAAGCAGCAATTCACTACAACCTGCCTTACTCGTCGTTATATGGTCGATTTAAACGTGGGATAAAATACGATTCGGATAACATAGAAGTAAACCAAGATAGCCAGTCGCAGATGGATGCCCATTCCTTCGGCATGGACTACACGACCTCCTCCCACCCACAAATCCAATACCAGAACCAGAACAGCTGA
Protein Sequence: MYLMITDVNSSEDHVPGTKNNGHTENLQHTPRTHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEVNQDSQSQMDAHSFGMDYTTSSHPQIQYQNQNS

Sequence clustering based on sequence similarity using MMseqs2