Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.3e-10 3e-08 35.9 0.0 1 39 73 112 73 116 0.90

2 4 9.4e-12 2.2e-09 39.6 0.1 1 39 127 165 127 168 0.95

3 4 1.2e-17 2.8e-15 58.5 0.0 1 45 182 227 182 227 0.98

4 4 1.6e-15 3.7e-13 51.7 0.0 1 39 234 273 234 277 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.3e-10	3e-08	35.9	0.0	1	39	73	112	73	116	0.90
2	4	9.4e-12	2.2e-09	39.6	0.1	1	39	127	165	127	168	0.95
3	4	1.2e-17	2.8e-15	58.5	0.0	1	45	182	227	182	227	0.98
4	4	1.6e-15	3.7e-13	51.7	0.0	1	39	234	273	234	277	0.93

Coding Sequence: atggccaAAAATAGATCCGTCCATCTGGCTTTCGTAGATCTTAAGAAGGCGTATGACTCGATACCCagaaccaagctatgggaagcaatggaagacatcCATTGTAAGACATGGAAGTCCCACGAAGatgtAGGTGATGATGTACCTGGAATGAAAAATAACGGCCATTTAGAATTAGGGCAACAAAGGTCTCACGCTGGGGGACCGAAAACTTGGACACAGGAAGATATGGATATGGCGTTAGATGCCTTACGAAATCACAATATGAGCCTAACTAAGGCATCCGCAACTTATGGTATTCCCTCCACTACTTTATGGCAGAGAGCTCATAGGCTAGGAATAGATACCCCCAAAAAAGAAGGGCCTACTAAATCTTGGACTGAAGAAAATCTAAATAACGCTCTGGAAGCATTAAGAACTGGAACAATATCTGCAAATAAAGCTAGCAAAGCATTTGgCATTCCCAGTAGCACCCTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCTTTCAACGCGGCACCGACTACTTGGACACCTGAAGACTTAGAAAAAGCCTTAGAGTCCATAAGAACGGGCCAGACGTCTGTACAAAAAGCTTCGACAGAATTCGGCATACCCACTGGAACATTATACGGTAGATGCAAAAGGGAAGGAATAGAATTGTCAAGGTCGAATCCTACGCCCTGGTCTGAAGATGCCATGGGAGAAGCTCTAGAGGCCGTTAGGTTAGGTCACATGTCCATCAACCAAGCGGCCATCCACTATAACCTGCCTTATTCCTCGCTGTATGGACGCTTCAAACGAGGCATCAAATACGAGGCGGATACCATAGATTATGTGGATCTAAATCAAGACAGCCACCTCCAAATGGAACATACATTTGGCATGGAATATACTACCTCTCCATCACAGATTCAATATCAAAACCAGAATAGCTGA
Protein Sequence: MAKNRSVHLAFVDLKKAYDSIPRTKLWEAMEDIHCKTWKSHEDVGDDVPGMKNNGHLELGQQRSHAGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYEADTIDYVDLNQDSHLQMEHTFGMEYTTSPSQIQYQNQNS*

Sequence clustering based on sequence similarity using MMseqs2