Cpal003099.2
Basic Information
- Insect
- Carterocephalus palaemon
- Gene Symbol
- -
- Assembly
- GCA_944567795.1
- Location
- CALYMS010000034.1:1151066-1160710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0057 0.33 11.6 1.5 3 23 247 268 246 268 0.96 2 23 0.17 9.9 7.0 0.3 1 22 647 668 647 668 0.95 3 23 6.9 4e+02 1.9 1.0 1 23 710 733 710 733 0.85 4 23 0.027 1.6 9.5 0.6 3 21 744 762 742 763 0.94 5 23 0.35 20 6.0 0.1 2 23 771 793 770 793 0.89 6 23 0.014 0.83 10.4 0.2 3 23 814 835 812 835 0.96 7 23 0.0009 0.053 14.1 1.9 1 23 841 864 841 864 0.95 8 23 0.1 6 7.7 0.0 1 23 891 914 891 914 0.90 9 23 0.015 0.89 10.3 3.4 1 23 919 941 919 941 0.97 10 23 0.0052 0.3 11.7 0.2 1 23 947 970 947 970 0.95 11 23 0.0019 0.11 13.1 1.3 1 23 983 1005 983 1005 0.97 12 23 0.00014 0.0084 16.6 1.8 1 23 1057 1080 1057 1080 0.97 13 23 0.0035 0.2 12.3 1.6 1 23 1151 1174 1151 1174 0.96 14 23 0.00076 0.044 14.4 2.0 2 23 1199 1221 1198 1221 0.95 15 23 0.0039 0.23 12.1 0.1 2 23 1227 1249 1226 1249 0.95 16 23 0.0081 0.47 11.1 0.2 1 21 1295 1315 1295 1316 0.95 17 23 0.001 0.058 14.0 0.6 1 23 1326 1348 1326 1348 0.93 18 23 7.2e-05 0.0042 17.6 0.3 2 23 1438 1460 1438 1460 0.93 19 23 1.5e-07 8.5e-06 26.1 1.1 3 23 1467 1487 1466 1487 0.98 20 23 0.004 0.23 12.1 1.0 1 23 1506 1529 1506 1529 0.93 21 23 0.05 2.9 8.6 0.0 1 23 1560 1582 1560 1582 0.98 22 23 0.02 1.2 9.9 0.6 1 23 1588 1611 1588 1611 0.95 23 23 0.0025 0.14 12.8 0.2 1 23 1619 1642 1619 1642 0.94
Sequence Information
- Coding Sequence
- atGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTTCTGGCCTCGAAAATAAGGGACTGCGTTTCCGTTCAGATAAGCGAAAATGACGACCTGCCTACGAATGTCTGCAGGAAGTGTATGGACAATGTCAATAACTGGCACATATTCAAGGCAGTGTGTGAAAGGACTCAAAACAAGCTACAGTCTCTGAGTAATAAAGATGGCAGCCTACTAGAAGAGATCAAAGTGAAAAATGAGCCCTTGTCAGATGAGGCCTATGATGATGGTGTAGTTATTGATGGCTCATACCCTGATAGTGAGAATGGTGGCACATCCAACAAAGTTCAGCCAGAGGGCCCTCCAATCTTGGCATCGCTGGGTCTCACACCGAGGAGTGATAAGACATATGTGGATCCTCGCATGGACTGGCAACGGGCTCATGCTATAATGAATATGGTTCAAGATGATGAAGTCATTGACGCCCTGCAGTCCACAGAAGAATGCGATGTGGGAGCTGACAGTGAAAAGGATGAAGAAGAAGAGGAGGAGGAAGAAGAAATGAATGGACAACAAACATTCCCACCTATAGTGAGTGTCCCAAACATGCCTGAAGTGTCGATCACCGTTATGCGCCCCACAGGAGAGACTTTACATGCCCGTCAAGGTATTCAACAGCTCGCCTCAAAAGATTGCCTCGTATGCGGCCGATCCTACCGATACTCTCACAATGCTAGACGACATGAACTCACATCACATAAATTCGATAGatacacaaataaaacaacatacaagAAAACCTCGTCGCATTTGCAACCAAAACTTAGGCCTAATCCTTTTAACCCCAAAGCGCGGCTCATGCCGAACCCGATTAGCCATAAAATGCAACTTCTTCCAAAGGCCATTCAAAATAAACCTATGCAACAAAAAACGATTGCTCCCCCAAAACCCATcccaattaaaacaataaaacccCAAACTAATAATTTGCCATATCCACTGCGTATTAAAGCATTAAAAGATTTACAAATAAAGAAAAAGGAACCTCAGATATTGAAGACGCTTCTAACAGCCAAGCCCGAAGTGTTGATTTCGGAACCGGAGATAATCAACTCGGGTCCAGAGAGTCCCGAAACCTTGATATCAGAACCAGAAATAGCATCGTTTCAAGTAGAAGCTATTCTTTCCGAACCTGACACATACGTAAATCAACATGACGATGATGAGGTTGAAGTGgaacaaaatcaatttaaatctagTAGACACGGTCAAAACTATGTCGATATGGACACTGACAATGAAATCGAAATCGCACGTCAGCTAGAAAACGAAGCCGAGGATGGAATGGATAATGAAACAGGTGACGCCGCACAGAATAATGAGCAAAATGAAACTGCAAATCACAGTGATAATGAGAAGGAGGACGAAGACGGTGAAATTAAAGCTGATGGTGCGGTAGAGAATAACGATACCAACAAGGATGATGACTTAACCAAAGAAGAAGAGGAGAGAGAAAATGAAGAGCAGAACCATCAAGAAGACACTTATGAAGATGACGATGACGATCTTCCTCCTGTGAGCTTGGCTCCTGTTGTGGAGATAAATGAGGAAATGCAAAATAATTCTTATAATAGTGAATtaaatgaagaagaagaagattttGAATCTGCAGACGCAAATGACACAGTAGATGGCGAAGAGCAAGAGCTCGTCGGTAAGGAGCTAGATCCCAATAAGCTTTACGTCACAAAAACCCAAAAAGACTTTATTATCAGGTATCGTGACATTATCGAGCAGATCAACACCAAACGTTGTCTTTGCTGCAACAGGGAACACCCGCGCAGAAAAGCAGTCATACAGCATTTACAAAAGAATGGCCATAAGGTTCCTAAGCACACTTGCTACAATTGCGTCATAACATTCGGTCATATTGGAGCTTTACTAAGTCACATGCGGTCAAACACTTGTACTGAtttatggaaaattatttataacgaaAATGGTATCACAGACGATCTCGTTTTGGAAGATGAACCGAAAGATCCAAAAGTTCAGTACAAAGATATATTTAATGCTAGATCGTACGCGTGCAAACTGTGTCCGGCCAAGTTTCAGTTGAAACAATTTATAATGAAGCACGTTTTGCACGTCCACGAAGATAATCAGTCTAAGGTGCATTTGGCCTGCGTTCATTGCGGGTCGAGATTTAAAGATACAAGGTTATGGAAGAAACACATCAGAAATGGGGAGTGCACCGTTTACATATCGTGCGATCTGTGTTCAGAGAGATTTGTCAACATGCAAGATTTCAACGACCACGCCTTAGCAGTTCACGCTGGCAGTTTCGACCTGTCCGAGAGCCAGAGCAAATGTGTTGACGGCCGACCGACTGACTGCCCGCTATGCGGCAAGAAGAACAGCAGCTATCCGAATTTGGTCAAACATTTGAAGATTATTCACAATGACGAAACACCTCATTACTGCCAGCATTGCGACGCCAAATTTGAACAAGCTGCAGATCTCAACCAGCACATTTACATGCAACACTCGGACAGATCATTGGGTGTGCAGATTTCCACCGAACCTGACATGTCCCTCGTGAAAGAGGAGGCGGAAGAATATCACTACTCATGCACGGAATGCAACGCCATTTTCGAAACTGTGGACGCATGGACTGATCATCAGGTGGCTGAGCATAATCAAGTCGCTCATCATTGTGATCAGTGCGAGAAAAAGTTTTTGCGACCGTCCGAGCTCGCTGAGCATAAAAATACTCATTTGCGTGTCAAGTTTTATCCTTGTAACATTTGCTCGAATTCGTACAGCACTCCTCAGAAGCTGTCTGAACATGTTCAACAGGCTCACCCAGGAGCCGGAGGATACAACTCCTTAGACGCAGAATTCTTCTGCGACATTTGTATAAGATCGTTCAAAAGCCGCCAGGCCTACTCCAATCACATGCGCATTCATTCCAAAGTACCGACCACAAACCGGAAGCCTGGGGAAGCCCCTAATCCAAAAGGATTCTCTCCGCAGATCATTGGAAAACCGATTCGGCACTTTTCGATGGTGCAACCCAGCTTCCTGTCATTTAAGCCAAATTGTAATGTTCCTAACGCACCTTACTCTTGTGATATTTGTGGCAAAGGTTTTAtgcataagaaaaatatttggAAGCACAAGAAAGTTCTGCATGCCGATCTCATAAACGAGAGAAACGATAGTGAGGAGAACACCATGGCGGCTTCCACCGAGGAAGACGACTACAATATAGATGAAAACGGCGCTCTTCTGTCGACGCCGCAATTTAACAGTTTCAACTTTACAAACATCGCTAACAATGTGCAGCAACAGCCGCCGCCCCAGCAGCACCAGCAGCAGCCCACGACACAAGACCCCATGCCGTACTCGTGTGAGCTATGCTACAAGCGATTCCCTCTTAGAACAAGCCTGTGGAAGCACAAACGCGCTAAGCATGGCATTATCAACGCCAGTTCCACGGGACCGTCTGAGTCGCAGGCGACGCCCAGCGAATCGTCAGGTCGATCGAGCTGCACCATATGCAAAATAAGTTTCTCCGACAAGAAATCTTACTATCGCCACAGGAAGAATGTTCATAAATCCACCGTTCAAATGTGCAAGATCTGCGGCAAACCACTCAGTTCCACGGTGGAGCTATACGAGCATTTGAGGGCCGCTCATGCGCAGGAACTCCTCGGATACAATGCTAGTCAAGCTCCTCTAGGTTCTAATAAATCGCAAGACGTGGGACAAGATATGGAAGCAGATTACGAACAGGATAACGACGTGGACCCCAGTGCGGAATATCAGGCACGATACCCGTGCGACACTTGCGGGAAACAGTTTGTTGGGCTGCTCGCGTTGCAAAATCATCAGTGCATCAATCAGATGCAATCGCAGCCGCAGACTTTCGACTGCGAGATATGTCACAAGAGCTACACATCCATCGCCGCTCTCAAGAGCCACCGCGGATGGCACTTGCGCTCGCCCGACGGCAAAGCCGCTGCAAATAACTCTGGTCTCTGGATGCCTCAGCACAAGGTTACGAGCAAGGTGAGCAAGCACGAGGTCGTCGATGCCTCCCAGCTGGCCAAGGTTACCCATACAGCACCCTTAAGCGCAGTGACGAAGAGGCGGTTACCAGAGGTGGAAGTGACCGTAGTGAATCCGAACAAGAAGATGCGGTCGGACGATTCCGTGGATATAGACCAGCAGAACAACTCATCCTCGGGAATCGACGATAGGTACTGTAACATTTGCGACAAGGAGTTCACGAAGCGGGCGGCGTACCAGCGCCACATGGACGAGGTGCACCAACCGAACTCGGTGTTCTGCCCGGTATGCGACAAGAGCTTCACGCGGAAGTCGACGTTGATCGTTCATATGAAGAAACATTACGAGGGTGGTGAAGGCAGTTCGACGGGGACGGGTCAGATGGACGAGGACGGGCACACGTGCGACGTTTGCGACTCGCAGTTCGAGACTGCGAGCGAATTGAACACGCACCGGACGCTGCAGCACGGGGACGGGGACGGGGACGGAGAGGGGGAGGAGGACACGGGCGAGTCGGAGGACGAGGGGGTCGCCAGCGCGCCCCAGCCGCCGGGCGAGTTTACATGCAGCCAGTGCGGCGACGGAGTGGCAACGCCGCGCGACCTCATCGCTCACCGCGCAATGCACTCCACTCCCACGGTGTTCTTCTGCAACATTTGTAAGGTGTACTTCGCCCGGGCACTCGACCTCTCCACGCATACCCGGGCGAGACACTCGGAAGCGGAGAAAGTATGCTTCCCCTGTGCCATGTGCGACCGCTCTTACTTAAACAAGAAGAGTTTGCAGCGTCATATCGAATTGGCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIRDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKAVCERTQNKLQSLSNKDGSLLEEIKVKNEPLSDEAYDDGVVIDGSYPDSENGGTSNKVQPEGPPILASLGLTPRSDKTYVDPRMDWQRAHAIMNMVQDDEVIDALQSTEECDVGADSEKDEEEEEEEEEMNGQQTFPPIVSVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTSHKFDRYTNKTTYKKTSSHLQPKLRPNPFNPKARLMPNPISHKMQLLPKAIQNKPMQQKTIAPPKPIPIKTIKPQTNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLISEPEIINSGPESPETLISEPEIASFQVEAILSEPDTYVNQHDDDEVEVEQNQFKSSRHGQNYVDMDTDNEIEIARQLENEAEDGMDNETGDAAQNNEQNETANHSDNEKEDEDGEIKADGAVENNDTNKDDDLTKEEEERENEEQNHQEDTYEDDDDDLPPVSLAPVVEINEEMQNNSYNSELNEEEEDFESADANDTVDGEEQELVGKELDPNKLYVTKTQKDFIIRYRDIIEQINTKRCLCCNREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDPKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLHVHEDNQSKVHLACVHCGSRFKDTRLWKKHIRNGECTVYISCDLCSERFVNMQDFNDHALAVHAGSFDLSESQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHNDETPHYCQHCDAKFEQAADLNQHIYMQHSDRSLGVQISTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQAHPGAGGYNSLDAEFFCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGEAPNPKGFSPQIIGKPIRHFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLINERNDSEENTMAASTEEDDYNIDENGALLSTPQFNSFNFTNIANNVQQQPPPQQHQQQPTTQDPMPYSCELCYKRFPLRTSLWKHKRAKHGIINASSTGPSESQATPSESSGRSSCTICKISFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTVELYEHLRAAHAQELLGYNASQAPLGSNKSQDVGQDMEADYEQDNDVDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQMQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLAKVTHTAPLSAVTKRRLPEVEVTVVNPNKKMRSDDSVDIDQQNNSSSGIDDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSTGTGQMDEDGHTCDVCDSQFETASELNTHRTLQHGDGDGDGEGEEDTGESEDEGVASAPQPPGEFTCSQCGDGVATPRDLIAHRAMHSTPTVFFCNICKVYFARALDLSTHTRARHSEAEKVCFPCAMCDRSYLNKKSLQRHIELAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00887588; iTF_00795880; iTF_01153177; iTF_00167070;
- 90% Identity
- -
- 80% Identity
- -