Pahi010116.1
Basic Information
- Insect
- Parelbella ahira
- Gene Symbol
- -
- Assembly
- GCA_018244795.1
- Location
- DWME01007786.1:6667-12283[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.039 2.8 9.2 1.3 3 23 60 81 59 81 0.96 2 23 0.28 20 6.5 0.3 1 22 463 484 463 484 0.95 3 23 3 2.2e+02 3.3 0.4 1 22 525 546 525 548 0.82 4 23 0.0011 0.08 14.1 0.7 3 21 559 577 557 578 0.94 5 23 0.37 26 6.1 0.1 2 23 586 608 585 608 0.89 6 23 0.019 1.4 10.2 0.1 3 23 629 650 627 650 0.96 7 23 0.0012 0.088 13.9 2.2 1 23 656 679 656 679 0.95 8 23 0.17 12 7.2 0.0 1 23 706 729 706 729 0.90 9 23 0.016 1.1 10.5 3.4 1 23 734 756 734 756 0.97 10 23 0.0053 0.38 11.9 0.2 1 23 762 785 762 785 0.95 11 23 0.0019 0.14 13.3 1.3 1 23 798 820 798 820 0.97 12 23 0.00015 0.01 16.8 1.8 1 23 869 892 869 892 0.97 13 23 0.00037 0.027 15.6 1.4 1 23 957 980 957 980 0.96 14 23 0.003 0.21 12.7 2.1 2 23 1005 1027 1004 1027 0.95 15 23 0.004 0.28 12.3 0.1 2 23 1033 1055 1032 1055 0.95 16 23 0.0082 0.58 11.3 0.2 1 21 1099 1119 1099 1120 0.95 17 23 0.001 0.072 14.2 0.6 1 23 1130 1152 1130 1152 0.93 18 23 7.3e-05 0.0052 17.8 0.3 2 23 1243 1265 1243 1265 0.93 19 23 1.5e-07 1.1e-05 26.3 1.1 3 23 1272 1292 1271 1292 0.98 20 23 0.066 4.7 8.5 0.2 1 23 1311 1334 1311 1334 0.92 21 23 0.05 3.6 8.9 0.0 1 23 1357 1379 1357 1379 0.98 22 23 0.023 1.6 9.9 0.6 1 23 1385 1408 1385 1408 0.95 23 23 5.3e-05 0.0038 18.2 0.3 1 23 1416 1439 1416 1439 0.96
Sequence Information
- Coding Sequence
- GGTGCCGATAGCGACAAGGACGAAGATGAGGATGAAGACGAAGAAGAGGGGAATGACTCACAATCTTTTCCGATAATAAATGTGCCTAACATGCCTGAAGTTTCCATCACTGTAATGCGACCCACCGGAGAAACCTTACACGCGCGTCAAGGTATCCAACAACTCGCATCCAAAGACTGCCTTGTATGTGGACGATCTTATCAATACTCCCACAACGCAAGACGCCACGAACTTACCTCGCACAGTTTTGACCGATACACAAACAAAACCACACACAAAAAGTCTCTATCACACCTGCAACCGAAATTTAGGCCTAATCCCTTTAATCCCAAAGCGCGGCTCATGCCCAATCCTATTAGCCACAAAATGCAATTCATCCCGAAAGGCATCCCAGCAAAAATTATACCAACGAAAAATATAGCTCCACCGAAACCGATCCccattaaaactataaaaccaCCACAAAATAATTTGCCATATCCATTACGTATTAAAGCACTGAAggatttacaaattaaaaagaaagaacCTCAAATCTTGAAAACTCTCTTGACGTCTAAGCCTGAAGTTTTGATCTCGGAAccagaaatattaaattctggTCCTGAAAGCCCAGAAACATTAATATCGGAGCCCGAAATAGCTTCGTTTCAAGTGGAAGCTATACTGTCAGAACCTGATGGTTATGTGAATCAGCAAGATGATGACGAAGGAGAGGGGGAATCGCATCAGTACAAAATGAATAATCATGGCCAGAACTATGACACTGTCGATATGGATACTGATAATGAAATCGAAATAGCTAGGCAACAAGAAAACGAATGCGATGATGATGAGCAGAAGGAAAATGACGGTGATGATAACACCGAAAATGATCACCAAGATGGAGCAACTAATCAAAATAATGACAAGGGCCAAAACGAAGATGGCGAAAATCATTCCGAGGGTGGGGTTGAGAACTCCGTTTCGAATAAGTGTGATGATGAAACCAAAGAAGGAGAGGAAAAGGAAGGTGACGATCAGGagcaacaaaatgaaaattatgaggatgatgatgacgatctgCCACCAGTGAGCTTGGCTCCTGTTGTAGAGATAAACGAGGACATGCAGACAAATTCATATAACAGCGAAAtgaatgaagaagaagaagaagaggaTTTGGAATCTGCAGATGCCAATGATACGGTAGATGGCGATGACAATGTGAAGGAGCTAGATCCAGATAAGCtctatgttacaaaaattcaacGTGACTTCATTGTGAAGTATCGCGATATTATTGAgcaaattaatactaaaaagtGTCTCTGTTGTAATAAGGAGCATCCACGGAGAAAAGCAGTAATTCAACATTTGCAAAAGAACGGCCATAAGGTGCCTAAACATACTTGCTACAATTGCGTAGTCACATTCGGTCATATTGGAGCTTTGCTCAGTCACATGAGGTCAAACACTTGCACTGATCTGTGGAAAATCATTTACAACGAAAACGGTATTACAGATGACCTTGTTTTAGAGGAACCAAAAAATCCCAAGGTTTTGTACAAAGACATTTTTAACGCTAGGTCATATTCGTGTAAACTATGTCCAGCAAAATTCCAATTGAAgcaatttataatgaaacatgTCCTGGATGTTCACGAAGATGGCCAATCAAGAGTACACTTGGCTTGTGTTCACTGCGGATCAAGATTCAAAGACAAAAGTTTATGGAAAAAGCATATCCGTAATGGAGAATGCACAGTTTATATTTCATGTGATCTGTGTACAGAAAAATTTGTCAATATGCAAGATTTTAATGATCACGCCTTAGCTGTTCACGCCGGAAGCGTCAATCTGTCTGATAGCCAGAGCAAATGTGTGGACGGTCGACCAACGGATTGCCCTATCTGTGGCAAGAAGAATAGCAGCTATCCCTACTTGGtcaaacatttgaaaattattcacAATGAGGAGAAACCACATTACTGCCAACATTGCGATTCCAAATTTGAACAAGCTGCTGATCTCAACAAGCACATTTACATGGCACACTCTGATGGATCTTTAGGCGTGCAGATTTCCTCAGAGCCCGACATGTCAATTGTTAAAGAGGAAGCGGAGGAATATCATTATTCGTGTACggaatgcaataatattttcgaAACCGTGGACGCGTGGACAGACCACCAAGTGGCTGAACACAATCAAGTCGCTCATCACTGTGATCAATGTGAAAAGAAATTTTTGCGACCATCTGAGCTGGCTGAACACAAAAACACACATTTGCGTGTGAAATTTTATCCTTGCAACATTTGTTCAAATTCTTATAGCACTCCACAAAAGCTTTCTGAACACGTCCAACAAGCTCATCCCGGGGCGGGAGCGCATAATTCGATGGATGCTGAATTTTTCTGCGACATATGTATAAGATCATTCAAGAGTCGCCAGGCATATTCTAATCATATGCGTATACACTCTAGAGTGCCCACGACAAACAGAAAGCCAGGAGAACCTCAAGGGTTTTCACCACAAATTATTGGTAAGCCAATTCGACACTTTTCTATGGTACAGCCAAGTTTTTTGTCTTTTAAGCCAAATTGTAATGTTCCTAACGCTCCTTACTCTTGTGATATATGTGGAAAAGGTTTTAtgcataagaaaaatatatggaaacATAAGAAAGTACTGCATGCTGATCTGATCAATGACAGAAACGATAGTGAAGAGAATACAATGCAGGCGTCCACCGAAGAAGATGACTATAACGTAGATGAAAACGGCGCGATTCTTTCAACGCCCCAGttcaatagttttaattttacaaacataactaataatatacagCATCAGCAACAGCCGCAATTAACACAGGATCCAGTGCCTTATACTTGTGAGTTATGTAACAAGCGATTTCCGCTTAGAACCAGTTTGTGGAAGCATAAACGTGCCAAGCATGGAATTATTAACGCTAGCTCTACTGGACCCCCCGAGCAGCAAGCGACCTCGAGCGAGTCGTCGGGTCGATCGAGTTGTACCATTTGCAAGATTAATTTCTCCGATAAAAAGTCCTACTATCGCCATAGAAAAAATGTCCACAAGTCAACTGTACAGATGTGCAAGATCTGTGGGAAACCCCTTAGTTCCACAGTGGAGCTTTATGAACATTTAAGAGCCGCTCACGCACAAGAGCTTTTGGGTTACAACGCTAGTCAGAGTACAAGCAAATCGAATGATATGGTACAAGAAATGGATCCCGATTGCGACCAGGATCAGGACTCTGTGGATCCTAACGCCGACTATCAAGCGCGATATCCGTGTGATACTTGTGGAAAACAGTTTGTTGGACTTCTTGCATTGCAAAACCATCAGTGCATCAATCAAATGCAAAATCAACCGCAAACTTTCGACTGCGAAATATGCCATAAAAGCTACACGTCCATTGCTGCGCTCAAGAGCCATCGCGGCTGGCATTTGCGATCGCCTGATGGCAAGGCCGCAGCTAATAATTCCGGTCTTTGGATGCCCCAGCACAAAGTTACAAGCAAAGTGAGTAAGCATGAAGTTGTTGATCCTTCTCAACTGGCCAAGGTTCAGCATACAACGCCCGTGAGCATGGTTACGAAGCGAAGATTACCGCCAGAAGTGGAAGTGACCGTAGTCAATCCGAACAAAAAGATGCGATCGGACGATTCCGTTGAAATGGATCAACAAAACAATTCATCTTCAGGGCTAGAAGACAGGTATTGTAACATTTGCGACAAAGAGTTCACGAAAAGGGCGGCCTATCAGCGCCACATGGATGAGGTCCACCAGCCCAATTCAGTATTCTGTCCGGTTTGCGACAAGAGTTTCACAAGGAAATCGACATTGATAGTTCACATGAAAAAGCATTACGAAGGGGGAGAAGGCAGTTCCACGGGAACCGGTCAGATGGACGACGACGCGCACATATGCGAGGTTTGCGATTCACAGTTCGAAACAGTCGAAGAATTGAACGCTCACCGCAGCGAGCAGCACGGTGAAGACGAAGAATCGGCTGAATCTGAGGATGAGGGGGTAGTGAACATACAGCAGCCAGGCGAGTTTACATGTAGCCAGTGTGGCGATGGGGTAGCCACGCCCCGCGACCTGATCGCCCACCGCACCATGCATGCCACGCAGACGAAGTTTTTCTGCAACATTTGCAAGGTCTACTTCGCTAGGGCTCTGGATCTCTCGTCACACACGAGAGCGAGACACTCCGACAACGATAAGGTCTGCTTCCCCTGTGCCATGTGCGACCGCTCCTACATGAATAAGAAGAGTTTGCAGCGGCACATCGAAATGGCTCACTGA
- Protein Sequence
- GADSDKDEDEDEDEEEGNDSQSFPIINVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYQYSHNARRHELTSHSFDRYTNKTTHKKSLSHLQPKFRPNPFNPKARLMPNPISHKMQFIPKGIPAKIIPTKNIAPPKPIPIKTIKPPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLISEPEILNSGPESPETLISEPEIASFQVEAILSEPDGYVNQQDDDEGEGESHQYKMNNHGQNYDTVDMDTDNEIEIARQQENECDDDEQKENDGDDNTENDHQDGATNQNNDKGQNEDGENHSEGGVENSVSNKCDDETKEGEEKEGDDQEQQNENYEDDDDDLPPVSLAPVVEINEDMQTNSYNSEMNEEEEEEDLESADANDTVDGDDNVKELDPDKLYVTKIQRDFIVKYRDIIEQINTKKCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEEPKNPKVLYKDIFNARSYSCKLCPAKFQLKQFIMKHVLDVHEDGQSRVHLACVHCGSRFKDKSLWKKHIRNGECTVYISCDLCTEKFVNMQDFNDHALAVHAGSVNLSDSQSKCVDGRPTDCPICGKKNSSYPYLVKHLKIIHNEEKPHYCQHCDSKFEQAADLNKHIYMAHSDGSLGVQISSEPDMSIVKEEAEEYHYSCTECNNIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQAHPGAGAHNSMDAEFFCDICIRSFKSRQAYSNHMRIHSRVPTTNRKPGEPQGFSPQIIGKPIRHFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLINDRNDSEENTMQASTEEDDYNVDENGAILSTPQFNSFNFTNITNNIQHQQQPQLTQDPVPYTCELCNKRFPLRTSLWKHKRAKHGIINASSTGPPEQQATSSESSGRSSCTICKINFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTVELYEHLRAAHAQELLGYNASQSTSKSNDMVQEMDPDCDQDQDSVDPNADYQARYPCDTCGKQFVGLLALQNHQCINQMQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLAKVQHTTPVSMVTKRRLPPEVEVTVVNPNKKMRSDDSVEMDQQNNSSSGLEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSTGTGQMDDDAHICEVCDSQFETVEELNAHRSEQHGEDEESAESEDEGVVNIQQPGEFTCSQCGDGVATPRDLIAHRTMHATQTKFFCNICKVYFARALDLSSHTRARHSDNDKVCFPCAMCDRSYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00277537;
- 90% Identity
- -
- 80% Identity
- -