Cnig016307.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294030.1:31450849-31458245[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.053 1.2e+02 3.8 0.1 16 43 107 135 100 140 0.68 2 5 0.023 50 5.0 0.0 22 45 143 166 139 173 0.85 3 5 0.0049 11 7.1 0.1 22 45 171 194 165 197 0.88 4 5 0.00017 0.37 11.8 0.1 21 52 198 229 196 229 0.88 5 5 0.0044 9.7 7.2 0.0 21 48 226 253 222 255 0.90
Sequence Information
- Coding Sequence
- ATGGAAAATGACGACCAGGATGAAGTTTTTCGATCACACTTGGAACCTGATGTTATAATCGATGATTCGgaaGACTCCTACTACGATGATGATGTCATCGATACAAGTCACATACAAGCACAAATTGGTCCCGAGGTATCTCTTATACCAGTCAAAAAGAAtccaatcaaaattaaaatgtttggtAAGCTTTCATGCAAGGATAAATCTAATTTGGAAGtgtacaaaattcaaaaaatagtgCAACAAAGATCTCCACGTCAAAATGTAAGACTGATATCGAAAGAAGAAGAGATACAAGCGGAAACAGAGGTTATAAATTCAAAACGAAAATCACTTCCACTGGAAAAGTGTCCTATATGTAAGAAATTTTTCCGCCGCATGAAAACTCATCTACAAAAGCACGAAAATGTTACTCGAGACCCAAATGATCCATTAACATGCCAATTTTGTAAGAAAGTTTTTAATACTGGCAGTAATTTAAGTATACACATGCGTACCCACACGGGTGACAAACCATACATATGCGAGATATGTACGAAAGGTTTTGCACAATCATGTAATTTGATTAATCATATGCGTATTCACACAGGTGAGAGGCCTTTTAAATGTCCGCATTGTGACCGTGCTTTTACACAATCAGGCAACCTAAATAATCATGTAAGATTGCATACTGacgaaaaaccatttaaatgtCACTTTTGTGAAAAAGCCTTTACTCAATCAGGCAACCTCAATTCCCACATTCGAAACAATCACAAAATTCCAAATATAGAAAACGATTTGAGTGATATCGAACTGGTTCAGTAA
- Protein Sequence
- MENDDQDEVFRSHLEPDVIIDDSEDSYYDDDVIDTSHIQAQIGPEVSLIPVKKNPIKIKMFGKLSCKDKSNLEVYKIQKIVQQRSPRQNVRLISKEEEIQAETEVINSKRKSLPLEKCPICKKFFRRMKTHLQKHENVTRDPNDPLTCQFCKKVFNTGSNLSIHMRTHTGDKPYICEICTKGFAQSCNLINHMRIHTGERPFKCPHCDRAFTQSGNLNNHVRLHTDEKPFKCHFCEKAFTQSGNLNSHIRNNHKIPNIENDLSDIELVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273092;
- 90% Identity
- iTF_00928325;
- 80% Identity
- iTF_00271850; iTF_00273275; iTF_00273092;