Cnig020319.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294031.1:26931782-26932249[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-13 9.2e-11 42.1 0.0 2 38 19 56 18 61 0.92
Sequence Information
- Coding Sequence
- ATGCCTAGAACCTATACGACTCCACTGGGAGCTAAGAAAGGAAGCAATTATAGTAAAGATATATTTATAGAAGCATTGCAACATGTacgaaataaacaaatgatcTTGAGAGAAGCCCAAGATGTCTACGGAATCCCAAAATCTACTTTGCAAGGtaaccttaaaaaaaatttaaaaacttcaggGGGGCAATGTGTCTTTTCTACACTAGAAGAACAAATGTTTGTCGATGTTATTATTGTTGCATCTGAATGGGGCTACCCCTTTGAAAAAATCGATATAAGACTTCTAGTAAAAAATTATCTAGAAAGCCTTGGCCGCAGAGAACCACGATTTAAAGATAACTTTCCTGGTGCAGACTGGTGCCTTAGGTTTATAAAATCCCACAGGGCTGAGTTAACTGTTCGCCTaagtgaaaacatgaaaacatcAAACGTTCGAGAGCTGCCGTCTCCAGAGACATATTAA
- Protein Sequence
- MPRTYTTPLGAKKGSNYSKDIFIEALQHVRNKQMILREAQDVYGIPKSTLQGNLKKNLKTSGGQCVFSTLEEQMFVDVIIVASEWGYPFEKIDIRLLVKNYLESLGRREPRFKDNFPGADWCLRFIKSHRAELTVRLSENMKTSNVRELPSPETY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270999; iTF_00268097; iTF_00268098; iTF_00268099; iTF_00268100; iTF_00268101; iTF_00268102; iTF_00268103; iTF_00268104; iTF_00268105; iTF_00268106; iTF_00268107; iTF_00268108; iTF_00268111; iTF_00268112; iTF_00268089; iTF_00268090; iTF_00268091; iTF_00268092; iTF_00268093; iTF_00268094; iTF_00268095; iTF_00268096;
- 90% Identity
- iTF_00270999;
- 80% Identity
- -