Cfla006425.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424435.1:65998978-65999445[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-14 6.1e-12 46.2 0.0 4 39 21 56 18 61 0.91
Sequence Information
- Coding Sequence
- ATGCCTAGAATCTACAAGACCCCACTGGGAGTTAAGAAAAGaagcaattatagtaaaaatatatttatagaagCATTGCAACATGTGCGAAATAAACGAATGACCTTGAGAGAAGCCCAAGATGTCTACGGAATCCCAAAATCTACTTTGCAAAAtcatgttaaaaaaagttttaaaacttcaggGGGGCAATGTGTCCTTTCTGCACTAGAAGAACAAATGTTtgtcgatattattattgttgcatcTGAATGGGGCTACCCCTTTGAAAAAATCGATATAAGACTTCTAGTAAAAGGTTATCTAGACAGCCTTGGCCGCAGAGAACcacgatttaaaaataactttcctGGTGAAGACTGGTGCCTTAGGTTTATGAAATACCACAGGGCTAAGTTAACTGTTCGCCTAAGTGAAAACATCAAACGTTCTAGAGCAGCTGTCTCCAGGGACATATTAACCTATTAA
- Protein Sequence
- MPRIYKTPLGVKKRSNYSKNIFIEALQHVRNKRMTLREAQDVYGIPKSTLQNHVKKSFKTSGGQCVLSALEEQMFVDIIIVASEWGYPFEKIDIRLLVKGYLDSLGRREPRFKNNFPGEDWCLRFMKYHRAKLTVRLSENIKRSRAAVSRDILTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271003;
- 90% Identity
- iTF_00268112;
- 80% Identity
- iTF_00268112;