Ccec031065.1
Basic Information
- Insect
- Calycopis cecrops
- Gene Symbol
- -
- Assembly
- GCA_001625245.1
- Location
- LUGF01053314.1:60827-61829[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-06 0.00076 20.2 0.0 2 43 20 61 19 63 0.81 2 2 1.6 1e+03 0.6 0.0 14 22 143 150 136 152 0.76
Sequence Information
- Coding Sequence
- ATGCCTCGTAAGTATAAACGAAAACCAGGCGCGGTGCCGCGCCACATCGGCTGGACAGAAGATAGTTTACTACATGCGTTCGAAGAGTTggacaaaaaacaaaaaggtaTCAACGAAATATCCCGGATTTATGGCATATCCTCTCGAACCTTAAGAAGACGATATGAAAAGAAAAACCAGCTGCTGGAAACCCAAGGAAAATACCCTGTCCTCGGCTTTAAAAATGAGAAGAGATTAGTATCCCAAATACTAAAGCTCGGAGACGCAGGATTTCCTCCTGAAAGGAGTTTAATTCGCCAATTAGCATATCAGTTTGCCGAAAAGTTAGGGTTGAAGCACAACTTTAACCACGAAACTCAAACAGCTGGACCACAATGGCTGAAAAGCTTCTTGGAAAGAAATCCCGAAGTAGTTGTGAGACAAGCTGAGGGCTTATCAATTCAAAGAGCGAAAGGTCTCAGTAGAGCCtaa
- Protein Sequence
- MPRKYKRKPGAVPRHIGWTEDSLLHAFEELDKKQKGINEISRIYGISSRTLRRRYEKKNQLLETQGKYPVLGFKNEKRLVSQILKLGDAGFPPERSLIRQLAYQFAEKLGLKHNFNHETQTAGPQWLKSFLERNPEVVVRQAEGLSIQRAKGLSRA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264473; iTF_00290639; iTF_00008912; iTF_01028217; iTF_01264524; iTF_01081530;
- 90% Identity
- -
- 80% Identity
- -