Nnit003139.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374636.1:16747891-16748503[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-09 7.7e-06 26.4 0.0 1 42 19 60 19 62 0.95 2 2 8 1e+04 -2.8 0.0 14 22 143 150 141 150 0.79
Sequence Information
- Coding Sequence
- atgcctcgtaaatataagcaaaaaccaggcgtggtgccgcgcaccatcaactggacagaagatagcttaatacttgccttggaagaattgagagagaaaaaaaaaggtattaatgaaatttctcgaacctacggaatatcctctcgaaccttaagaagacgttacgaaacaagtaaccagcaactacttactcaaggaaaatatcctgttcttggtttcaaaaatgaaaaaagactggtagctcatatattgaaactcggagacgccggttttccgcctgatagaattgtaattcgccaattagcttatcagtttgccgagaaattggagttaaaacacagctttaacaatgagaatgaaatggctggaccacaatggctgaaaagctttctagaaagaaatcctgaaatagctttgagacaagctgagggtttatcaattgaaagagcgaagggtctcaacagaacagaagtTGCAAATTTTTTCACACTCTTAATAGATACTTTTAACTAA
- Protein Sequence
- MPRKYKQKPGVVPRTINWTEDSLILALEELREKKKGINEISRTYGISSRTLRRRYETSNQQLLTQGKYPVLGFKNEKRLVAHILKLGDAGFPPDRIVIRQLAYQFAEKLELKHSFNNENEMAGPQWLKSFLERNPEIALRQAEGLSIERAKGLNRTEVANFFTLLIDTFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00261812;
- 90% Identity
- -
- 80% Identity
- -