Ppra054098.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621259.1:5761075-5761672[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 4.5e-05 25.0 0.0 1 43 19 61 19 62 0.94 2 2 9 2.3e+03 0.4 0.0 14 22 142 149 136 151 0.78
Sequence Information
- Coding Sequence
- ATGCCTCGCAAGTATAAACGAAAGCCAGGCGTGGTGCCACGCCACATCAACTGGACAGAAGATAGTTTAACACTTGCGTTCgaagaactaaataaaaaacaaaaaagtatcaACGAAATATCCCGgatttatggcatatcctctcgAACCTTAAGAAGACGGTATGAAAAAAGAAACCAGCTGCTGGTAACCCAAGGGTATCCTGCCCTTggcattgaaaatgaaaaaagacTAGTTTCCCATATATTGAAGCTCGGAGACGCAGGATTTCCTCCTGAAAGAAGTTTAATTCGCCAATTAGCCTATCAGTTTGCCGAAAAATTTGGATTGAAgcacaattttaataatgaaactaAAATGGCTGGACCGCAATGGTTGAAAAGCTTCCTTGAAAGAAATCCCGAAATAGTTGTGAGGCAAGCTGAGGGCTTATCAATTCAAAGAGCGAAGGGTCTAAGCAGGGCCGAAGTAGCCAAATAA
- Protein Sequence
- MPRKYKRKPGVVPRHINWTEDSLTLAFEELNKKQKSINEISRIYGISSRTLRRRYEKRNQLLVTQGYPALGIENEKRLVSHILKLGDAGFPPERSLIRQLAYQFAEKFGLKHNFNNETKMAGPQWLKSFLERNPEIVVRQAEGLSIQRAKGLSRAEVAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00261812;
- 90% Identity
- iTF_00290639; iTF_00008912; iTF_01028217; iTF_01264524;
- 80% Identity
- -