Mlor018435.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056795.1:18637260-18637925[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-08 2.7e-05 24.6 0.0 1 43 19 61 19 62 0.94 2 2 2.4 1.3e+03 0.1 0.0 14 22 143 150 137 152 0.78
Sequence Information
- Coding Sequence
- ATGCCTCGCAAGTATAAACGAAAGCCAGGCGTGATTCCGCGCCACATCAACTGGACAGAAGATAGTTTAACACTTGCATtcgaagaactaaataaaaaacaaaaaagtatcaaCGAAATATCCCGGATTTATGGCATATCCTCTCGAACTTTAAGGAGACGGTATGAAAAAAGAAACCAGCTGCTGGTAACCCAAGGAAAATACCCTGTCCTTGgctttgaaaatgaaaaaagactAGTTTCCCATATATTGAAGCTCGGGGACGCAGGATTTCCTCCTGAAAGAAGTTTAATTTGCCAATTAGCCTATCAGTTTGCCGAAAAATTAGGATTGAAGCgcaattttaataatgaaactaaaacggctggaccgcAATGGTTGAAAAGCTTCCTTGAAAGAAATCCCGAAATAGTTGTGAGGCAAGCTGAGGGCTTATCAATTCAAAGAGCGAAGGGTCTAAGCAGGGCCGAAGTAGCCAAATTTTTTGATCTGCTCATAACCGTCTTAACTGATAATAATTTGCTAGATAAGCCGGAGCGAATTTTCAATATGAATGAAAGCGGTGTCTAA
- Protein Sequence
- MPRKYKRKPGVIPRHINWTEDSLTLAFEELNKKQKSINEISRIYGISSRTLRRRYEKRNQLLVTQGKYPVLGFENEKRLVSHILKLGDAGFPPERSLICQLAYQFAEKLGLKRNFNNETKTAGPQWLKSFLERNPEIVVRQAEGLSIQRAKGLSRAEVAKFFDLLITVLTDNNLLDKPERIFNMNESGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00261812;
- 90% Identity
- iTF_01264473;
- 80% Identity
- -