Nsyl027518.1
Basic Information
- Insect
- Napeogenes sylphis
- Gene Symbol
- -
- Assembly
- GCA_959347405.1
- Location
- OY365784.1:3736557-3737624[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-10 1.8e-07 32.1 0.0 1 40 12 51 12 56 0.90
Sequence Information
- Coding Sequence
- atGCCTGGAAACAAGAACACATTTCTAAACTACAGTGAAGATGCTATGAAAGCTGCAGTTGAAGAGGTTCGCCTGCACAAAATATCTATCCGAGCCGCTGCAAAAAAATTTGCAGTTCCCAGAaccacattaaaatataaattagaggGTAAATCCCCAATGGACAGAAAAATGGGCCCTCCTTCAATTCTAACAAGCAAAGAGGAGGCTGAGATAAGCAAGTGGGTAGAGAACATGGCACATGCTGGTTTTCCAGTTACCGTTGAGCAGCTGTGCATGAGTGTGGAGAAGTACATAAAAGACGTGAAACGTGATACCCCTTTAAAGATGGAAGACCAGGCAGGACAAGTGAAGTCCTACATTGGAAAAGAGTATGGTGATGAGATCTTGGAAGATCCTTCTCGAATATTCAATTGTGACGAgtctgcttttttttttaatcctaaaGGCCCCAAAGTTCTTGCTAGAAAAGGAGATAAAACAGTTTATCAAAAAGTTAATGTTGATGAGAAGGAGTGCGTTACAGTTTTGCTTTGTTACCGAACGCCACCCATATTTTACAGCCTATGGATGTCGCAGTGTTCAGAAGCCTCAAAGAAGCATGGAGGAAAAAAATCCATCAATGGAGGATGGACAATGTTGTTCAAGGAGGTTCTCATAtcctaa
- Protein Sequence
- MPGNKNTFLNYSEDAMKAAVEEVRLHKISIRAAAKKFAVPRTTLKYKLEGKSPMDRKMGPPSILTSKEEAEISKWVENMAHAGFPVTVEQLCMSVEKYIKDVKRDTPLKMEDQAGQVKSYIGKEYGDEILEDPSRIFNCDESAFFFNPKGPKVLARKGDKTVYQKVNVDEKECVTVLLCYRTPPIFYSLWMSQCSEASKKHGGKKSINGGWTMLFKEVLIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034486; iTF_00960103; iTF_01502027; iTF_00256813; iTF_01034488; iTF_01152960;
- 90% Identity
- -
- 80% Identity
- -