Tjac019132.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387214.1:14454692-14455875[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-08 1.5e-05 25.1 0.1 1 40 12 51 12 56 0.90
Sequence Information
- Coding Sequence
- atgcctggaaacaagaacacatttataaactacagtgaagatgctatgaaagctgcagttgaagaggttcgcctgcacaaaatatctatccgagccgctgcaaaaaaaattgcagttcccagaaccacattaaaatataaattagagggtaaatccccaatggacagaaaaatgggccctccttcaattctaacaagcaaagaggaggctgagataagcaagtgggtagagaacatggcacatgctggttttccagttaccgttgagcagctgtgcatgagtgtggagaagtacataaaagacgtgaaacgtgataccccttttaaagatggaagaccaggcaggacgtgggttataggttttctgcggagaaatccttcgatttcaaaaagagtttctcaaaacttaactgcctcacgggcAGCAGTCACTAAGGCAAACATACTGAATTGGTTTTCAGAAGTGAAGTCCTACATTGGAAAAGAGTATGGTGATGAGATCTTGGAAGATCCATCTCGAATATTCAATTGTGACGAcctatggatgttgcagtgttCAGAAGCCTCAAAGAAGCATGGAGGAAAAAAACCCATCAATGGAGGATGGACAATGTTGTTCAAGGAGGTTCTCATATCCTAA
- Protein Sequence
- MPGNKNTFINYSEDAMKAAVEEVRLHKISIRAAAKKIAVPRTTLKYKLEGKSPMDRKMGPPSILTSKEEAEISKWVENMAHAGFPVTVEQLCMSVEKYIKDVKRDTPFKDGRPGRTWVIGFLRRNPSISKRVSQNLTASRAAVTKANILNWFSEVKSYIGKEYGDEILEDPSRIFNCDDLWMLQCSEASKKHGGKKPINGGWTMLFKEVLIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034485;
- 90% Identity
- iTF_00256813;
- 80% Identity
- -