Bscu028874.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459114.1:543055-544968[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 1e-05 26.7 0.0 5 38 1 34 1 35 0.95 2 2 3.1 2.2e+03 0.0 0.0 15 28 578 591 577 593 0.91
Sequence Information
- Coding Sequence
- ATGAAAAAAGCAGTGGATATGGTGCTAAATGAGGGAATTTCATTGCGAAAAGCGGCTAAAAATAATGGTGTGGCATACCAAACTTTTTCACGGTATgtaaaaattttcaaattatctCCGTCTGCAAGGCTGTACCCGAACTATGCAGTGAACGCCGTGTTTAGTAAAGAAGAAGAACTATCTTTAACATCCTATATAGAAAACTGCTCCACTATGTTCTATGGACTAACGTTGCTAGATGTAGGGCGGTTGGCTTACCAGACCGCAGCTGCTAATTCCAAAAAAATGCCAGATTATTGGATAAAAAACAAGAGAGCGAGCACTGACTGGCTCAAACGCTTCCGTAAAAGGAATCCTTCCCTTGCCCTTCGCACTCCAGAGGCATGCAGCCTATCTCGGGCGACTTCGTTTAACAGGCACAATGTGAACAAGTTCTATGACAATTTGTTCGACGTTCTGTCACGATCTTCCGACAGGTTTTCTTCAGGAACTCGCATATATAACCTTGACGAAACCGGTTTAACAACGGTCCAGGTTCCTGCGCAAATACTTGCACAAAAAGGTATGAAGCAAGTTAATAAAGTAACCAGCGCTGAAAGAGGAACGTTAGTCACCTTGTGTTGCATTATAAGTGCAACTGGCCAATACATCCCTCCAGTAATGATTTTTCCCAGAGTGCATTTTAAAGACCATATGCTGCTTGGTGCACCTGCAGGTACACTTGGACTTGCAAATCCATCCGGGTGGATGAACTCGAGTTGTTTTTTCAAAGTGGTAGAACATTTTGTTGAATTCACATCTAGCTCCAAAGAAAAACCCACCCTGTTGATGGACAATCACGAAAGCCacatcagcgttgccgctctCAATTATGGAAAAGTGCATGGCGTAATAATGTTGACTTTTCCGCCACATTCGTCTAACAAAATGCAACCACTGGATGTCTCCGTCTACAAACCATTTAAAACGGCGTACAACCAAGCAATAGACTCATTCATGATGCAGAATCCTGACAGGAATGCTTTCACTGATGTGGACTTTATGAGCAGTTTGGCCACCGACAGGCCTCTTATTGATACAACTGAGGAAACAGGCCCAAGCGCAAGCGGTGGAGTATCGACACTCATCACACCAGAAAGGATTGATCCTGAAGGAGAAACAATTTTGAATGTTTCAAATCAACCCAGACGTCCCGAACCACAAAGTGATTTTATCAGCCCAGAACAGTTCAAAGGCTACCCTAAGGCTCCACCAAGACAGAATAAGAGGAAACAACGAAAAAAGGGGAAAAGTACGATACTGACGGACACGccggaaaaagaagaattagAGAAGAGAGAATTGTTGAAAAAGACGCCAAAAAGGAAGATTCAAGCTATCAAAAAGCGGAAGATACTTCAATCTGAGTCTGAATCAGATGGCAATGAGGACATTATTCTTCAAGATTGTTCTATAGACGGTTCGTTCGTTAGTGTGCGCTCTACGGAGGAAATTTTTTCGCGAGAAATTAAAACCGGGACCTATGTTTCGGTTCGATTCAATGCGGACAAAAATGAAACAGTTTATTATTTTGGCCAAATAATAAAAGACAAAGACGACAGCAATCACTACCAAATTCTCTTCCTGCGGAGGAGCGGCACAAGGAACAAATTCTCTGAGCCTGAGGTTGAGGATATTGCATCGGTAGCACAGGAAGATATAGAGTTGGTGCTGCCTACGCCGACTCCATGTGGTCACACTAGTCGCCAAAGGGCATCGGTTGTGTTTGATGTTGACTTTCAGGGCTATGAAGCAGCCTAA
- Protein Sequence
- MKKAVDMVLNEGISLRKAAKNNGVAYQTFSRYVKIFKLSPSARLYPNYAVNAVFSKEEELSLTSYIENCSTMFYGLTLLDVGRLAYQTAAANSKKMPDYWIKNKRASTDWLKRFRKRNPSLALRTPEACSLSRATSFNRHNVNKFYDNLFDVLSRSSDRFSSGTRIYNLDETGLTTVQVPAQILAQKGMKQVNKVTSAERGTLVTLCCIISATGQYIPPVMIFPRVHFKDHMLLGAPAGTLGLANPSGWMNSSCFFKVVEHFVEFTSSSKEKPTLLMDNHESHISVAALNYGKVHGVIMLTFPPHSSNKMQPLDVSVYKPFKTAYNQAIDSFMMQNPDRNAFTDVDFMSSLATDRPLIDTTEETGPSASGGVSTLITPERIDPEGETILNVSNQPRRPEPQSDFISPEQFKGYPKAPPRQNKRKQRKKGKSTILTDTPEKEELEKRELLKKTPKRKIQAIKKRKILQSESESDGNEDIILQDCSIDGSFVSVRSTEEIFSREIKTGTYVSVRFNADKNETVYYFGQIIKDKDDSNHYQILFLRRSGTRNKFSEPEVEDIASVAQEDIELVLPTPTPCGHTSRQRASVVFDVDFQGYEAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00241395; iTF_00693717; iTF_00693743; iTF_00976403; iTF_00241431;
- 90% Identity
- iTF_00241395;
- 80% Identity
- -